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Items: 1 to 20 of 169


Genome-wide mapping of in vivo protein-DNA interactions.

Johnson DS, Mortazavi A, Myers RM, Wold B.

Science. 2007 Jun 8;316(5830):1497-502. Epub 2007 May 31.


Genome-wide analysis of repressor element 1 silencing transcription factor/neuron-restrictive silencing factor (REST/NRSF) target genes.

Bruce AW, Donaldson IJ, Wood IC, Yerbury SA, Sadowski MI, Chapman M, Göttgens B, Buckley NJ.

Proc Natl Acad Sci U S A. 2004 Jul 13;101(28):10458-63. Epub 2004 Jul 6.


Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment.

Kim J, Bhinge AA, Morgan XC, Iyer VR.

Nat Methods. 2005 Jan;2(1):47-53. Epub 2004 Dec 21.


Genome-wide identification of target genes repressed by the zinc finger transcription factor REST/NRSF in the HEK 293 cell line.

Liu Z, Liu M, Niu G, Cheng Y, Fei J.

Acta Biochim Biophys Sin (Shanghai). 2009 Dec;41(12):1008-17.


Direct interaction of NRSF with TBP: chromatin reorganization and core promoter repression for neuron-specific gene transcription.

Murai K, Naruse Y, Shaul Y, Agata Y, Mori N.

Nucleic Acids Res. 2004 Jun 14;32(10):3180-9. Print 2004.


Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level.

Bruce AW, López-Contreras AJ, Flicek P, Down TA, Dhami P, Dillon SC, Koch CM, Langford CF, Dunham I, Andrews RM, Vetrie D.

Genome Res. 2009 Jun;19(6):994-1005. doi: 10.1101/gr.089086.108. Epub 2009 Apr 28.


Molecular biology. Site-seeing by sequencing.

Fields S.

Science. 2007 Jun 8;316(5830):1441-2. No abstract available.


The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso.

Defossez PA, Kelly KF, Filion GJ, Pérez-Torrado R, Magdinier F, Menoni H, Nordgaard CL, Daniel JM, Gilson E.

J Biol Chem. 2005 Dec 30;280(52):43017-23. Epub 2005 Oct 17.


NsrR targets in the Escherichia coli genome: new insights into DNA sequence requirements for binding and a role for NsrR in the regulation of motility.

Partridge JD, Bodenmiller DM, Humphrys MS, Spiro S.

Mol Microbiol. 2009 Aug;73(4):680-94. doi: 10.1111/j.1365-2958.2009.06799.x. Epub 2009 Jul 27.


Evidence of the neuron-restrictive silencer factor (NRSF) interaction with Sp3 and its synergic repression to the mu opioid receptor (MOR) gene.

Kim CS, Choi HS, Hwang CK, Song KY, Lee BK, Law PY, Wei LN, Loh HH.

Nucleic Acids Res. 2006;34(22):6392-403. Epub 2006 Nov 27.


Evolution of the vertebrate gene regulatory network controlled by the transcriptional repressor REST.

Johnson R, Samuel J, Ng CK, Jauch R, Stanton LW, Wood IC.

Mol Biol Evol. 2009 Jul;26(7):1491-507. doi: 10.1093/molbev/msp058. Epub 2009 Mar 24.


A feature-based approach to modeling protein-DNA interactions.

Sharon E, Lubliner S, Segal E.

PLoS Comput Biol. 2008 Aug 22;4(8):e1000154. doi: 10.1371/journal.pcbi.1000154.


DNA wrapping and distortion by an oligomeric homeodomain protein.

Williams H, Jayaraman PS, Gaston K.

J Mol Biol. 2008 Oct 31;383(1):10-23. doi: 10.1016/j.jmb.2008.08.004. Epub 2008 Aug 7.


Identification of potential target genes for the neuron-restrictive silencer factor.

Schoenherr CJ, Paquette AJ, Anderson DJ.

Proc Natl Acad Sci U S A. 1996 Sep 3;93(18):9881-6.


A new binding motif for the transcriptional repressor REST uncovers large gene networks devoted to neuronal functions.

Otto SJ, McCorkle SR, Hover J, Conaco C, Han JJ, Impey S, Yochum GS, Dunn JJ, Goodman RH, Mandel G.

J Neurosci. 2007 Jun 20;27(25):6729-39.


Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.

Jothi R, Cuddapah S, Barski A, Cui K, Zhao K.

Nucleic Acids Res. 2008 Sep;36(16):5221-31. doi: 10.1093/nar/gkn488. Epub 2008 Aug 6.


Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential.

Liu Z, Mao F, Guo JT, Yan B, Wang P, Qu Y, Xu Y.

Nucleic Acids Res. 2005 Jan 26;33(2):546-58. Print 2005.

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