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Items: 1 to 20 of 441


BioPP: a tool for web-publication of biological networks.

Viswanathan GA, Nudelman G, Patil S, Sealfon SC.

BMC Bioinformatics. 2007 May 22;8:168.


Signaling network of dendritic cells in response to pathogens: a community-input supported knowledgebase.

Patil S, Pincas H, Seto J, Nudelman G, Nudelman I, Sealfon SC.

BMC Syst Biol. 2010 Oct 7;4:137. doi: 10.1186/1752-0509-4-137.


KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.

Costa RS, Veríssimo A, Vinga S.

BMC Syst Biol. 2014 Aug 13;8:85. doi: 10.1186/s12918-014-0085-3.


Research resource: Gonadotropin-releasing hormone receptor-mediated signaling network in LbetaT2 cells: a pathway-based web-accessible knowledgebase.

Fink MY, Pincas H, Choi SG, Nudelman G, Sealfon SC.

Mol Endocrinol. 2010 Sep;24(9):1863-71. doi: 10.1210/me.2009-0530. Epub 2010 Jun 30.


CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.

Flórez LA, Lammers CR, Michna R, Stülke J.

Bioinformatics. 2010 Dec 1;26(23):2997-9. doi: 10.1093/bioinformatics/btq585. Epub 2010 Oct 14.


Payao: a community platform for SBML pathway model curation.

Matsuoka Y, Ghosh S, Kikuchi N, Kitano H.

Bioinformatics. 2010 May 15;26(10):1381-3. doi: 10.1093/bioinformatics/btq143. Epub 2010 Apr 5.


HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.


KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.

Moutselos K, Kanaris I, Chatziioannou A, Maglogiannis I, Kolisis FN.

BMC Bioinformatics. 2009 Oct 8;10:324. doi: 10.1186/1471-2105-10-324.


An editor for pathway drawing and data visualization in the Biopathways Workbench.

Byrnes RW, Cotter D, Maer A, Li J, Nadeau D, Subramaniam S.

BMC Syst Biol. 2009 Oct 2;3:99. doi: 10.1186/1752-0509-3-99.


An online model composition tool for system biology models.

Coskun SA, Cicek AE, Lai N, Dash RK, Ozsoyoglu ZM, Ozsoyoglu G.

BMC Syst Biol. 2013 Sep 5;7:88. doi: 10.1186/1752-0509-7-88.


CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.


Integration of CellDesigner and SABIO-RK.

Funahashi A, Jouraku A, Matsuoka Y, Kitano H.

In Silico Biol. 2007;7(2 Suppl):S81-90.


CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.

Schneider J, Vorhölter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A.

Genet Mol Res. 2010 Aug 24;9(3):1660-72. doi: 10.4238/vol9-3gmr901.


PathwayAccess: CellDesigner plugins for pathway databases.

Van Hemert JL, Dickerson JA.

Bioinformatics. 2010 Sep 15;26(18):2345-6. doi: 10.1093/bioinformatics/btq423. Epub 2010 Jul 20.


Social pathway annotation: extensions of the systems biology metabolic modelling assistant.

Navas-Delgado I, Real-Chicharro A, Medina MÁ, Sánchez-Jiménez F, Aldana-Montes JF.

Brief Bioinform. 2011 Nov;12(6):576-87. doi: 10.1093/bib/bbq061. Epub 2010 Oct 21.


cPath: open source software for collecting, storing, and querying biological pathways.

Cerami EG, Bader GD, Gross BE, Sander C.

BMC Bioinformatics. 2006 Nov 13;7:497.


Acorn: a grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interface.

Sroka J, Bieniasz-Krzywiec L, Gwóźdź S, Leniowski D, Lącki J, Markowski M, Avignone-Rossa C, Bushell ME, McFadden J, Kierzek AM.

BMC Bioinformatics. 2011 May 24;12:196. doi: 10.1186/1471-2105-12-196.


BioPAX support in CellDesigner.

Mi H, Muruganujan A, Demir E, Matsuoka Y, Funahashi A, Kitano H, Thomas PD.

Bioinformatics. 2011 Dec 15;27(24):3437-8. doi: 10.1093/bioinformatics/btr586. Epub 2011 Oct 21.

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