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Results: 1 to 20 of 96

1.

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

Genome Biol. 2007;8(5):R81.

PMID:
17501994
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M.

Nucleic Acids Res. 2003 Jul 1;31(13):3477-82.

PMID:
12824348
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Xiang Z, Qin ZS, He Y.

Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.

PMID:
17485426
[PubMed - indexed for MEDLINE]
Free Article
4.

ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis.

Patriotis PC, Querec TD, Gruver BN, Brown TR, Patriotis C.

Biotechniques. 2001 Oct;31(4):862, 864, 866-8, 870, 872.

PMID:
11680718
[PubMed - indexed for MEDLINE]
5.

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.

PMID:
16371165
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A variance-stabilizing transformation for gene-expression microarray data.

Durbin BP, Hardin JS, Hawkins DM, Rocke DM.

Bioinformatics. 2002;18 Suppl 1:S105-10.

PMID:
12169537
[PubMed - indexed for MEDLINE]
Free Article
7.

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.

PMID:
15980552
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DNMAD: web-based diagnosis and normalization for microarray data.

Vaquerizas JM, Dopazo J, Díaz-Uriarte R.

Bioinformatics. 2004 Dec 12;20(18):3656-8. Epub 2004 Jul 9.

PMID:
15247094
[PubMed - indexed for MEDLINE]
Free Article
9.

RReportGenerator: automatic reports from routine statistical analysis using R.

Raffelsberger W, Krause Y, Moulinier L, Kieffer D, Morand AL, Brino L, Poch O.

Bioinformatics. 2008 Jan 15;24(2):276-8. Epub 2007 Nov 24.

PMID:
18037684
[PubMed - indexed for MEDLINE]
Free Article
10.

Computational strategies for analyzing data in gene expression microarray experiments.

Aittokallio T, Kurki M, Nevalainen O, Nikula T, West A, Lahesmaa R.

J Bioinform Comput Biol. 2003 Oct;1(3):541-86. Review.

PMID:
15290769
[PubMed - indexed for MEDLINE]
11.

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID:
17344240
[PubMed - indexed for MEDLINE]
Free Article
12.

ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.

Chung HJ, Kim M, Park CH, Kim J, Kim JH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W460-4.

PMID:
15215430
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling).

De Beuf K, Pipelers P, Andriankaja M, Thas O, Inzé D, Crainiceanu C, Clement L.

BMC Bioinformatics. 2012 Sep 14;13:234. doi: 10.1186/1471-2105-13-234.

PMID:
22974078
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Array-A-Lizer: a serial DNA microarray quality analyzer.

Petri A, Fleckner J, Matthiessen MW.

BMC Bioinformatics. 2004 Feb 9;5:12.

PMID:
15018654
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org.

Eijssen LM, Jaillard M, Adriaens ME, Gaj S, de Groot PJ, Müller M, Evelo CT.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W71-6. doi: 10.1093/nar/gkt293. Epub 2013 Apr 24.

PMID:
23620278
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46. doi: 10.1186/1471-2105-9-46.

PMID:
18218103
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

arrayQCplot: software for checking the quality of microarray data.

Lee EK, Yi SG, Park T.

Bioinformatics. 2006 Sep 15;22(18):2305-7. Epub 2006 Jul 24.

PMID:
16864592
[PubMed - indexed for MEDLINE]
Free Article
18.

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Scacheri PC, Crawford GE, Davis S.

Methods Enzymol. 2006;411:270-82. Review.

PMID:
16939795
[PubMed - indexed for MEDLINE]
19.

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP.

Bioinformatics. 2004 Feb 12;20(3):323-31.

PMID:
14960458
[PubMed - indexed for MEDLINE]
Free Article
20.

Systematic approaches for incorporating control spots and data quality information to improve normalization of cDNA microarray data.

Wang D, Zhang CH, Soares MB, Huang J.

J Biopharm Stat. 2007;17(3):415-31.

PMID:
17479391
[PubMed - indexed for MEDLINE]

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