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Results: 1 to 20 of 99

1.

Mapping networks of physical interactions between genomic elements using 5C technology.

Dostie J, Dekker J.

Nat Protoc. 2007;2(4):988-1002.

PMID:
17446898
[PubMed - indexed for MEDLINE]
2.

Determining spatial chromatin organization of large genomic regions using 5C technology.

van Berkum NL, Dekker J.

Methods Mol Biol. 2009;567:189-213. doi: 10.1007/978-1-60327-414-2_13. Review.

PMID:
19588094
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J.

Genome Res. 2006 Oct;16(10):1299-309. Epub 2006 Sep 5.

PMID:
16954542
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Chromosome conformation capture carbon copy technology.

Dostie J, Zhan Y, Dekker J.

Curr Protoc Mol Biol. 2007 Oct;Chapter 21:Unit 21.14. doi: 10.1002/0471142727.mb2114s80.

PMID:
18265398
[PubMed - indexed for MEDLINE]
5.

Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C).

Miele A, Dekker J.

Methods Mol Biol. 2009;464:105-21. doi: 10.1007/978-1-60327-461-6_7.

PMID:
18951182
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E.

Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14.

PMID:
23411633
[PubMed - indexed for MEDLINE]
7.

Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C).

Louwers M, Splinter E, van Driel R, de Laat W, Stam M.

Nat Protoc. 2009;4(8):1216-29. doi: 10.1038/nprot.2009.113. Epub 2009 Jul 30.

PMID:
19644461
[PubMed - indexed for MEDLINE]
8.

Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification.

Gavrilov A, Eivazova E, Priozhkova I, Lipinski M, Razin S, Vassetzky Y.

Methods Mol Biol. 2009;567:171-88. doi: 10.1007/978-1-60327-414-2_12. Review. Erratum in: Methods Mol Biol. 2009;567:E1.

PMID:
19588093
[PubMed - indexed for MEDLINE]
9.

Analysis of interactions between genomic loci through Chromosome Conformation Capture (3C).

El Kaderi B, Medler S, Ansari A.

Curr Protoc Cell Biol. 2012 Sep;Chapter 22:Unit22.15. doi: 10.1002/0471143030.cb2215s56.

PMID:
22968842
[PubMed - indexed for MEDLINE]
10.

From cells to chromatin: capturing snapshots of genome organization with 5C technology.

Ferraiuolo MA, Sanyal A, Naumova N, Dekker J, Dostie J.

Methods. 2012 Nov;58(3):255-67. doi: 10.1016/j.ymeth.2012.10.011. Epub 2012 Nov 5.

PMID:
23137922
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A Torrent of data: mapping chromatin organization using 5C and high-throughput sequencing.

Fraser J, Ethier SD, Miura H, Dostie J.

Methods Enzymol. 2012;513:113-41. doi: 10.1016/B978-0-12-391938-0.00005-7.

PMID:
22929767
[PubMed - indexed for MEDLINE]
12.

Computing chromosome conformation.

Fraser J, Rousseau M, Blanchette M, Dostie J.

Methods Mol Biol. 2010;674:251-68. doi: 10.1007/978-1-60761-854-6_16.

PMID:
20827597
[PubMed - indexed for MEDLINE]
13.

Hi-C: a method to study the three-dimensional architecture of genomes.

van Berkum NL, Lieberman-Aiden E, Williams L, Imakaev M, Gnirke A, Mirny LA, Dekker J, Lander ES.

J Vis Exp. 2010 May 6;(39). pii: 1869. doi: 10.3791/1869.

PMID:
20461051
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4C-seq) method.

Gheldof N, Leleu M, Noordermeer D, Rougemont J, Reymond A.

Methods Mol Biol. 2012;786:211-25. doi: 10.1007/978-1-61779-292-2_13.

PMID:
21938629
[PubMed - indexed for MEDLINE]
15.

Mapping chromatin interactions by chromosome conformation capture.

Miele A, Gheldof N, Tabuchi TM, Dostie J, Dekker J.

Curr Protoc Mol Biol. 2006 May;Chapter 21:Unit 21.11. doi: 10.1002/0471142727.mb2111s74.

PMID:
18265379
[PubMed - indexed for MEDLINE]
16.

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Hagège H, Klous P, Braem C, Splinter E, Dekker J, Cathala G, de Laat W, Forné T.

Nat Protoc. 2007;2(7):1722-33.

PMID:
17641637
[PubMed - indexed for MEDLINE]
17.

Analysis of long-range chromatin interactions using Chromosome Conformation Capture.

Naumova N, Smith EM, Zhan Y, Dekker J.

Methods. 2012 Nov;58(3):192-203. doi: 10.1016/j.ymeth.2012.07.022. Epub 2012 Aug 15.

PMID:
22903059
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An evaluation of 3C-based methods to capture DNA interactions.

Simonis M, Kooren J, de Laat W.

Nat Methods. 2007 Nov;4(11):895-901. Review.

PMID:
17971780
[PubMed - indexed for MEDLINE]
19.

Detection of gene loops by 3C in yeast.

Singh BN, Ansari A, Hampsey M.

Methods. 2009 Aug;48(4):361-7. doi: 10.1016/j.ymeth.2009.02.018. Epub 2009 Mar 6.

PMID:
19269325
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

High-resolution circular chromosome conformation capture assay.

Göndör A, Rougier C, Ohlsson R.

Nat Protoc. 2008;3(2):303-13. doi: 10.1038/nprot.2007.540.

PMID:
18274532
[PubMed - indexed for MEDLINE]

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