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1.

The Rat Genome Database, update 2007--easing the path from disease to data and back again.

Twigger SN, Shimoyama M, Bromberg S, Kwitek AE, Jacob HJ; RGD Team.

Nucleic Acids Res. 2007 Jan;35(Database issue):D658-62. Epub 2006 Dec 6.

2.

Rat Genome Database (RGD): mapping disease onto the genome.

Twigger S, Lu J, Shimoyama M, Chen D, Pasko D, Long H, Ginster J, Chen CF, Nigam R, Kwitek A, Eppig J, Maltais L, Maglott D, Schuler G, Jacob H, Tonellato PJ.

Nucleic Acids Res. 2002 Jan 1;30(1):125-8.

3.

The Rat Genome Database 2009: variation, ontologies and pathways.

Dwinell MR, Worthey EA, Shimoyama M, Bakir-Gungor B, DePons J, Laulederkind S, Lowry T, Nigram R, Petri V, Smith J, Stoddard A, Twigger SN, Jacob HJ; RGD Team.

Nucleic Acids Res. 2009 Jan;37(Database issue):D744-9. doi: 10.1093/nar/gkn842. Epub 2008 Nov 7.

4.

Analysis of disease-associated objects at the Rat Genome Database.

Wang SJ, Laulederkind SJ, Hayman GT, Smith JR, Petri V, Lowry TF, Nigam R, Dwinell MR, Worthey EA, Munzenmaier DH, Shimoyama M, Jacob HJ.

Database (Oxford). 2013 Jun 21;2013:bat046. doi: 10.1093/database/bat046. Print 2013.

5.

RGD: a comparative genomics platform.

Shimoyama M, Smith JR, Hayman T, Laulederkind S, Lowry T, Nigam R, Petri V, Wang SJ, Dwinell M, Jacob H; RGD Team.

Hum Genomics. 2011 Jan;5(2):124-9.

6.

The Rat Genome Database (RGD): developments towards a phenome database.

de la Cruz N, Bromberg S, Pasko D, Shimoyama M, Twigger S, Chen J, Chen CF, Fan C, Foote C, Gopinath GR, Harris G, Hughes A, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nie J, Nigam R, Petri V, Reilly D, Wang W, Wu W, Zuniga-Meyer A, Zhao L, Kwitek A, Tonellato P, Jacob H.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D485-91.

7.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

8.

Ontology searching and browsing at the Rat Genome Database.

Laulederkind SJ, Tutaj M, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Dwinell MR, Jacob HJ.

Database (Oxford). 2012 Mar 20;2012:bas016. doi: 10.1093/database/bas016. Print 2012.

9.

Exploring phenotypic data at the rat genome database.

Twigger SN, S Smith J, Zuniga-Meyer A, Bromberg SK.

Curr Protoc Bioinformatics. 2006 Jul;Chapter 1:Unit 1.14. doi: 10.1002/0471250953.bi0114s14.

PMID:
18428755
10.

Rat Genome Database: a unique resource for rat, human, and mouse quantitative trait locus data.

Nigam R, Laulederkind SJ, Hayman GT, Smith JR, Wang SJ, Lowry TF, Petri V, De Pons J, Tutaj M, Liu W, Jayaraman P, Munzenmaier DH, Worthey EA, Dwinell MR, Shimoyama M, Jacob HJ.

Physiol Genomics. 2013 Sep 16;45(18):809-16. doi: 10.1152/physiolgenomics.00065.2013. Epub 2013 Jul 23.

11.

PhenoMiner: quantitative phenotype curation at the rat genome database.

Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M.

Database (Oxford). 2013 Apr 19;2013:bat015. doi: 10.1093/database/bat015. Print 2013.

12.

Exploring genetic, genomic, and phenotypic data at the rat genome database.

Laulederkind SJ, Hayman GT, Wang SJ, Lowry TF, Nigam R, Petri V, Smith JR, Dwinell MR, Jacob HJ, Shimoyama M.

Curr Protoc Bioinformatics. 2012 Dec;Chapter 1:Unit1.14. doi: 10.1002/0471250953.bi0114s40.

13.

QTL MatchMaker: a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTL.

Star KV, Song Q, Zhu A, Böttinger EP.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D586-9.

14.

The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.

Laulederkind SJ, Shimoyama M, Hayman GT, Lowry TF, Nigam R, Petri V, Smith JR, Wang SJ, de Pons J, Kowalski G, Liu W, Rood W, Munzenmaier DH, Dwinell MR, Twigger SN, Jacob HJ; RGD Team.

Database (Oxford). 2011 Feb 14;2011:bar002. doi: 10.1093/database/bar002. Print 2011.

15.

AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond.

Hu ZL, Fritz ER, Reecy JM.

Nucleic Acids Res. 2007 Jan;35(Database issue):D604-9. Epub 2006 Nov 29.

16.

RatMap--rat genome tools and data.

Petersen G, Johnson P, Andersson L, Klinga-Levan K, Gómez-Fabre PM, Ståhl F.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D492-4.

17.

Tools and strategies for physiological genomics: the Rat Genome Database.

Twigger SN, Pasko D, Nie J, Shimoyama M, Bromberg S, Campbell D, Chen J, dela Cruz N, Fan C, Foote C, Harris G, Hickmann B, Ji Y, Jin W, Li D, Mathis J, Nenasheva N, Nigam R, Petri V, Reilly D, Ruotti V, Schauberger E, Seiler K, Slyper R, Smith J, Wang W, Wu W, Zhao L, Zuniga-Meyer A, Tonellato PJ, Kwitek AE, Jacob HJ.

Physiol Genomics. 2005 Oct 17;23(2):246-56. Epub 2005 Aug 16.

18.

The Mouse Genome Database (MGD): mouse biology and model systems.

Bult CJ, Eppig JT, Kadin JA, Richardson JE, Blake JA; Mouse Genome Database Group.

Nucleic Acids Res. 2008 Jan;36(Database issue):D724-8. Epub 2007 Dec 23.

19.

The Mouse Genome Database (MGD): the model organism database for the laboratory mouse.

Blake JA, Richardson JE, Bult CJ, Kadin JA, Eppig JT; Mouse Genome Database Group.

Nucleic Acids Res. 2002 Jan 1;30(1):113-5.

20.

The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology.

Eppig JT, Bult CJ, Kadin JA, Richardson JE, Blake JA, Anagnostopoulos A, Baldarelli RM, Baya M, Beal JS, Bello SM, Boddy WJ, Bradt DW, Burkart DL, Butler NE, Campbell J, Cassell MA, Corbani LE, Cousins SL, Dahmen DJ, Dene H, Diehl AD, Drabkin HJ, Frazer KS, Frost P, Glass LH, Goldsmith CW, Grant PL, Lennon-Pierce M, Lewis J, Lu I, Maltais LJ, McAndrews-Hill M, McClellan L, Miers DB, Miller LA, Ni L, Ormsby JE, Qi D, Reddy TB, Reed DJ, Richards-Smith B, Shaw DR, Sinclair R, Smith CL, Szauter P, Walker MB, Walton DO, Washburn LL, Witham IT, Zhu Y; Mouse Genome Database Group.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D471-5.

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