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Results: 1 to 20 of 98

Similar articles for PubMed (Select 17140114)

1.

Comparison of sample preparation methods for ChIP-chip assays.

O'Geen H, Nicolet CM, Blahnik K, Green R, Farnham PJ.

Biotechniques. 2006 Nov;41(5):577-80.

2.

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.

Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, Kapranov P, Nix DA, Gingeras TR, Zhang X, Holster H, Jiang N, Green RD, Song JS, McCuine SA, Anton E, Nguyen L, Trinklein ND, Ye Z, Ching K, Hawkins D, Ren B, Scacheri PC, Rozowsky J, Karpikov A, Euskirchen G, Weissman S, Gerstein M, Snyder M, Yang A, Moqtaderi Z, Hirsch H, Shulha HP, Fu Y, Weng Z, Struhl K, Myers RM, Lieb JD, Liu XS.

Genome Res. 2008 Mar;18(3):393-403. doi: 10.1101/gr.7080508. Epub 2008 Feb 7.

3.

Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification.

van Bakel H, van Werven FJ, Radonjic M, Brok MO, van Leenen D, Holstege FC, Timmers HT.

Nucleic Acids Res. 2008 Mar;36(4):e21. doi: 10.1093/nar/gkm1144. Epub 2008 Jan 7.

4.

Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP).

Kaufmann K, Muiño JM, Østerås M, Farinelli L, Krajewski P, Angenent GC.

Nat Protoc. 2010 Mar;5(3):457-72. doi: 10.1038/nprot.2009.244. Epub 2010 Feb 18.

PMID:
20203663
5.

Genome-scale ChIP-chip analysis using 10,000 human cells.

Acevedo LG, Iniguez AL, Holster HL, Zhang X, Green R, Farnham PJ.

Biotechniques. 2007 Dec;43(6):791-7.

6.
7.

Combining chromatin immunoprecipitation and oligonucleotide tiling arrays (ChIP-Chip) for functional genomic studies.

Eeckhoute J, Lupien M, Brown M.

Methods Mol Biol. 2009;556:155-64. doi: 10.1007/978-1-60327-192-9_11.

PMID:
19488877
8.
9.

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET.

Mathur D, Danford TW, Boyer LA, Young RA, Gifford DK, Jaenisch R.

Genome Biol. 2008;9(8):R126. doi: 10.1186/gb-2008-9-8-r126. Epub 2008 Aug 13.

10.
11.

HAT: hypergeometric analysis of tiling-arrays with application to promoter-GeneChip data.

Taskesen E, Beekman R, de Ridder J, Wouters BJ, Peeters JK, Touw IP, Reinders MJ, Delwel R.

BMC Bioinformatics. 2010 May 21;11:275. doi: 10.1186/1471-2105-11-275.

12.

Chromatin immunoprecipitation-based analysis of gene regulatory networks operative in human embryonic stem cells.

Jung M, Adjaye J.

Methods Mol Biol. 2012;873:269-80. doi: 10.1007/978-1-61779-794-1_18.

PMID:
22528362
13.

Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies.

Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB, Ruan Y, Snyder M.

Genome Res. 2007 Jun;17(6):898-909.

14.

Comparison of whole genome amplification methods for further quantitative analysis with microarray-based comparative genomic hybridization.

Lee YS, Tsai CN, Tsai CL, Chang SD, Hsueh DW, Liu CT, Ma CC, Lin SH, Wang TH, Wang HS.

Taiwan J Obstet Gynecol. 2008 Mar;47(1):32-41. doi: 10.1016/S1028-4559(08)60052-2.

PMID:
18400580
15.

Poisson approximation for significance in genome-wide ChIP-chip tiling arrays.

Zhang Y.

Bioinformatics. 2008 Dec 15;24(24):2825-31. doi: 10.1093/bioinformatics/btn549. Epub 2008 Oct 25.

16.

Mapping protein-DNA interactions using ChIP-sequencing.

Massie CE, Mills IG.

Methods Mol Biol. 2012;809:157-73. doi: 10.1007/978-1-61779-376-9_11.

PMID:
22113275
17.

Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms.

Borneman AR, Zhang ZD, Rozowsky J, Seringhaus MR, Gerstein M, Snyder M.

Funct Integr Genomics. 2007 Oct;7(4):335-45. Epub 2007 Jul 19.

PMID:
17638031
18.

Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data.

Sharov AA, Masui S, Sharova LV, Piao Y, Aiba K, Matoba R, Xin L, Niwa H, Ko MS.

BMC Genomics. 2008 Jun 3;9:269. doi: 10.1186/1471-2164-9-269.

19.
20.

Rank-statistics based enrichment-site prediction algorithm developed for chromatin immunoprecipitation on chip experiments.

Ghosh S, Hirsch HA, Sekinger E, Struhl K, Gingeras TR.

BMC Bioinformatics. 2006 Oct 5;7:434.

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