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Items: 1 to 20 of 164

1.

STRING 7--recent developments in the integration and prediction of protein interactions.

von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Krüger B, Snel B, Bork P.

Nucleic Acids Res. 2007 Jan;35(Database issue):D358-62. Epub 2006 Nov 10.

2.

STRING 8--a global view on proteins and their functional interactions in 630 organisms.

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760. Epub 2008 Oct 21.

3.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

4.

STRING: known and predicted protein-protein associations, integrated and transferred across organisms.

von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D433-7.

5.

BioGRID: a general repository for interaction datasets.

Stark C, Breitkreutz BJ, Reguly T, Boucher L, Breitkreutz A, Tyers M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D535-9.

6.

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.

Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D561-8. doi: 10.1093/nar/gkq973. Epub 2010 Nov 2.

7.

SMART 5: domains in the context of genomes and networks.

Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D257-60.

8.

The PEDANT genome database.

Frishman D, Mokrejs M, Kosykh D, Kastenmüller G, Kolesov G, Zubrzycki I, Gruber C, Geier B, Kaps A, Albermann K, Volz A, Wagner C, Fellenberg M, Heumann K, Mewes HW.

Nucleic Acids Res. 2003 Jan 1;31(1):207-11.

9.

DIMA 2.0--predicted and known domain interactions.

Pagel P, Oesterheld M, Tovstukhina O, Strack N, Stümpflen V, Frishman D.

Nucleic Acids Res. 2008 Jan;36(Database issue):D651-5. Epub 2007 Nov 13.

10.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

11.

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

Kersey P, Bower L, Morris L, Horne A, Petryszak R, Kanz C, Kanapin A, Das U, Michoud K, Phan I, Gattiker A, Kulikova T, Faruque N, Duggan K, Mclaren P, Reimholz B, Duret L, Penel S, Reuter I, Apweiler R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D297-302.

12.

MINT: the Molecular INTeraction database.

Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D572-4. Epub 2006 Nov 29.

13.

EcID. A database for the inference of functional interactions in E. coli.

Andres Leon E, Ezkurdia I, García B, Valencia A, Juan D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D629-35. doi: 10.1093/nar/gkn853. Epub 2008 Nov 12.

14.

SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803.

Kim WY, Kang S, Kim BC, Oh J, Cho S, Bhak J, Choi JS.

BMC Bioinformatics. 2008;9 Suppl 1:S20. doi: 10.1186/1471-2105-9-S1-S20.

15.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

16.

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.

McDermott J, Guerquin M, Frazier Z, Chang AN, Samudrala R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W324-5.

17.

APID: Agile Protein Interaction DataAnalyzer.

Prieto C, De Las Rivas J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W298-302.

18.

The universal protein resource (UniProt).

UniProt Consortium.

Nucleic Acids Res. 2008 Jan;36(Database issue):D190-5. Epub 2007 Nov 27.

19.

MIPS: analysis and annotation of genome information in 2007.

Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. Epub 2007 Dec 23.

20.

STRING: a database of predicted functional associations between proteins.

von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B.

Nucleic Acids Res. 2003 Jan 1;31(1):258-61.

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