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Results: 1 to 20 of 277

1.

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle.

Wu WS, Li WH, Chen BS.

BMC Bioinformatics. 2006 Sep 29;7:421.

PMID:
17010188
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identifying gene regulatory modules of heat shock response in yeast.

Wu WS, Li WH.

BMC Genomics. 2008 Sep 23;9:439. doi: 10.1186/1471-2164-9-439.

PMID:
18811975
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Systematic identification of yeast cell cycle transcription factors using multiple data sources.

Wu WS, Li WH.

BMC Bioinformatics. 2008 Dec 5;9:522. doi: 10.1186/1471-2105-9-522.

PMID:
19061501
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Yeast cell cycle transcription factors identification by variable selection criteria.

Wang H, Wang YH, Wu WS.

Gene. 2011 Oct 10;485(2):172-6. doi: 10.1016/j.gene.2011.06.001. Epub 2011 Jun 16.

PMID:
21703335
[PubMed - indexed for MEDLINE]
5.

Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data.

Wu WS, Li WH, Chen BS.

BMC Bioinformatics. 2007 Jun 8;8:188.

PMID:
17559637
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Identifying combinatorial regulation of transcription factors and binding motifs.

Kato M, Hata N, Banerjee N, Futcher B, Zhang MQ.

Genome Biol. 2004;5(8):R56. Epub 2004 Jul 28.

PMID:
15287978
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Learning transcriptional networks from the integration of ChIP-chip and expression data in a non-parametric model.

Youn A, Reiss DJ, Stuetzle W.

Bioinformatics. 2010 Aug 1;26(15):1879-86. doi: 10.1093/bioinformatics/btq289. Epub 2010 Jun 4.

PMID:
20525821
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data.

Ruan J, Deng Y, Perkins EJ, Zhang W.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S8. doi: 10.1186/1471-2164-10-S1-S8.

PMID:
19594885
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

PMID:
18426580
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mining yeast transcriptional regulatory modules from factor DNA-binding sites and gene expression data.

Pham TH, Satou K, Ho TB.

Genome Inform. 2004;15(2):287-95.

PMID:
15706514
[PubMed - indexed for MEDLINE]
11.

Prioritization of gene regulatory interactions from large-scale modules in yeast.

Lee HJ, Manke T, Bringas R, Vingron M.

BMC Bioinformatics. 2008 Jan 22;9:32. doi: 10.1186/1471-2105-9-32.

PMID:
18211684
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Systematic identification of cell cycle regulated transcription factors from microarray time series data.

Cheng C, Li LM.

BMC Genomics. 2008 Mar 3;9:116. doi: 10.1186/1471-2164-9-116.

PMID:
18315882
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.

BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355.

PMID:
20587029
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Banerjee N, Zhang MQ.

Nucleic Acids Res. 2003 Dec 1;31(23):7024-31.

PMID:
14627835
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Transcriptome network component analysis with limited microarray data.

Galbraith SJ, Tran LM, Liao JC.

Bioinformatics. 2006 Aug 1;22(15):1886-94. Epub 2006 Jun 9.

PMID:
16766556
[PubMed - indexed for MEDLINE]
Free Article
16.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
[PubMed - indexed for MEDLINE]
Free Article
17.

Global and threshold-free Transcriptional Regulatory Networks reconstruction through integrating ChIP-Chip and expression data.

Liu Q, Yang Y, Li Y, Zhang Z.

Curr Protein Pept Sci. 2011 Nov;12(7):631-42.

PMID:
21827425
[PubMed - indexed for MEDLINE]
18.

Statistical methods for identifying yeast cell cycle transcription factors.

Tsai HK, Lu HH, Li WH.

Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13532-7. Epub 2005 Sep 12.

PMID:
16157877
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identification of yeast transcriptional regulation networks using multivariate random forests.

Xiao Y, Segal MR.

PLoS Comput Biol. 2009 Jun;5(6):e1000414. doi: 10.1371/journal.pcbi.1000414. Epub 2009 Jun 19.

PMID:
19543377
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Integrating multiple types of data to predict novel cell cycle-related genes.

Wang L, Hou L, Qian M, Li F, Deng M.

BMC Syst Biol. 2011 Jun 20;5 Suppl 1:S9. doi: 10.1186/1752-0509-5-S1-S9.

PMID:
21689484
[PubMed - indexed for MEDLINE]
Free PMC Article

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