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Results: 1 to 20 of 205

1.

Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation.

Das S, Paul S, Bag SK, Dutta C.

BMC Genomics. 2006 Jul 25;7:186.

PMID:
16869956
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

Singer GA, Hickey DA.

Gene. 2003 Oct 23;317(1-2):39-47.

PMID:
14604790
[PubMed - indexed for MEDLINE]
3.

Nanoarchaeal 16S rRNA gene sequences are widely dispersed in hyperthermophilic and mesophilic halophilic environments.

Casanueva A, Galada N, Baker GC, Grant WD, Heaphy S, Jones B, Yanhe M, Ventosa A, Blamey J, Cowan DA.

Extremophiles. 2008 Sep;12(5):651-6. doi: 10.1007/s00792-008-0170-x. Epub 2008 Jun 14.

PMID:
18553053
[PubMed - indexed for MEDLINE]
4.

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

Podar M, Makarova KS, Graham DE, Wolf YI, Koonin EV, Reysenbach AL.

Biol Direct. 2013 Apr 22;8:9. doi: 10.1186/1745-6150-8-9.

PMID:
23607440
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Preferred codons and amino acid couples in hyperthermophiles.

De Farias ST, Bonato MC.

Genome Biol. 2002 Jul 19;3(8):PREPRINT0006. Epub 2002 Jul 19.

PMID:
12186639
[PubMed - indexed for MEDLINE]
6.

The complete set of tRNA species in Nanoarchaeum equitans.

Randau L, Pearson M, Söll D.

FEBS Lett. 2005 May 23;579(13):2945-7.

PMID:
15893316
[PubMed - indexed for MEDLINE]
Free Article
7.

Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

Randau L, Münch R, Hohn MJ, Jahn D, Söll D.

Nature. 2005 Feb 3;433(7025):537-41.

PMID:
15690044
[PubMed - indexed for MEDLINE]
8.

The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism.

Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, Beeson KY, Bibbs L, Bolanos R, Keller M, Kretz K, Lin X, Mathur E, Ni J, Podar M, Richardson T, Sutton GG, Simon M, Soll D, Stetter KO, Short JM, Noordewier M.

Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12984-8. Epub 2003 Oct 17.

PMID:
14566062
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont.

Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO.

Nature. 2002 May 2;417(6884):63-7.

PMID:
11986665
[PubMed - indexed for MEDLINE]
10.

Proteome composition in Plasmodium falciparum: higher usage of GC-rich nonsynonymous codons in highly expressed genes.

Chanda I, Pan A, Dutta C.

J Mol Evol. 2005 Oct;61(4):513-23. Epub 2005 Jul 21.

PMID:
16044241
[PubMed - indexed for MEDLINE]
11.

The split genes of Nanoarchaeum equitans are an ancestral character.

Di Giulio M.

Gene. 2008 Sep 15;421(1-2):20-6. doi: 10.1016/j.gene.2008.06.010. Epub 2008 Jun 11.

PMID:
18590807
[PubMed - indexed for MEDLINE]
12.

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.

Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, Lykidis A, Mavromatis K, Sun H, Hudson ME, Chen W, Deciu C, Hutchison D, Eads JR, Anderson A, Fernandes F, Szeto E, Lapidus A, Kyrpides NC, Saier MH Jr, Richardson PM, Rachel R, Huber H, Eisen JA, Koonin EV, Keller M, Stetter KO.

Genome Biol. 2008;9(11):R158. doi: 10.1186/gb-2008-9-11-r158. Epub 2008 Nov 10.

PMID:
19000309
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A pursuit of lineage-specific and niche-specific proteome features in the world of archaea.

Roy Chowdhury A, Dutta C.

BMC Genomics. 2012 Jun 12;13:236. doi: 10.1186/1471-2164-13-236.

PMID:
22691113
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The basal phylogenetic position of Nanoarchaeum equitans (Nanoarchaeota).

Branciamore S, Gallori E, Di Giulio M.

Front Biosci. 2008 May 1;13:6886-92.

PMID:
18508702
[PubMed - indexed for MEDLINE]
15.

Evolutionary and functional genomics of the Archaea.

Makarova KS, Koonin EV.

Curr Opin Microbiol. 2005 Oct;8(5):586-94. Review.

PMID:
16111915
[PubMed - indexed for MEDLINE]
16.

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

Knight RD, Freeland SJ, Landweber LF.

Genome Biol. 2001;2(4):RESEARCH0010. Epub 2001 Mar 22.

PMID:
11305938
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Species-specific protein sequence and fold optimizations.

Dumontier M, Michalickova K, Hogue CW.

BMC Bioinformatics. 2002 Dec 17;3:39. Epub 2002 Dec 17.

PMID:
12487631
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.

Sandberg R, Bränden CI, Ernberg I, Cöster J.

Gene. 2003 Jun 5;311:35-42.

PMID:
12853136
[PubMed - indexed for MEDLINE]
19.

Evolutionary constraints on codon and amino acid usage in two strains of human pathogenic actinobacteria Tropheryma whipplei.

Das S, Paul S, Dutta C.

J Mol Evol. 2006 May;62(5):645-58. Epub 2006 Mar 22.

PMID:
16557339
[PubMed - indexed for MEDLINE]
20.

Analysis of tRNA composition and folding in psychrophilic, mesophilic and thermophilic genomes: indications for thermal adaptation.

Dutta A, Chaudhuri K.

FEMS Microbiol Lett. 2010 Apr;305(2):100-8. doi: 10.1111/j.1574-6968.2010.01922.x. Epub 2010 Feb 5.

PMID:
20659165
[PubMed - indexed for MEDLINE]

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