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Items: 1 to 20 of 466

1.

Advances in the Exon-Intron Database (EID).

Shepelev V, Fedorov A.

Brief Bioinform. 2006 Jun;7(2):178-85. Epub 2006 Mar 9. Review.

3.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

4.

PLATCOM: a Platform for Computational Comparative Genomics.

Choi K, Ma Y, Choi JH, Kim S.

Bioinformatics. 2005 May 15;21(10):2514-6. Epub 2005 Feb 24.

5.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

6.
7.

Gene structure prediction using an orthologous gene of known exon-intron structure.

Seneff S, Wang C, Burge CB.

Appl Bioinformatics. 2004;3(2-3):81-90.

PMID:
15693733
8.

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278.

9.

Bioinformatic analysis of exon repetition, exon scrambling and trans-splicing in humans.

Shao X, Shepelev V, Fedorov A.

Bioinformatics. 2006 Mar 15;22(6):692-8. Epub 2005 Nov 24.

10.

EID: the Exon-Intron Database-an exhaustive database of protein-coding intron-containing genes.

Saxonov S, Daizadeh I, Fedorov A, Gilbert W.

Nucleic Acids Res. 2000 Jan 1;28(1):185-90.

11.

Xpro: database of eukaryotic protein-encoding genes.

Gopalan V, Tan TW, Lee BT, Ranganathan S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D59-63.

12.

ESTMAP: a system for expressed sequence tags mapping on genomic sequences.

Milanesi L, Rogozin IB.

IEEE Trans Nanobioscience. 2003 Jun;2(2):75-8.

PMID:
15382662
13.

ASPicDB: a database resource for alternative splicing analysis.

Castrignanò T, D'Antonio M, Anselmo A, Carrabino D, D'Onorio De Meo A, D'Erchia AM, Licciulli F, Mangiulli M, Mignone F, Pavesi G, Picardi E, Riva A, Rizzi R, Bonizzoni P, Pesole G.

Bioinformatics. 2008 May 15;24(10):1300-4. doi: 10.1093/bioinformatics/btn113. Epub 2008 Apr 3.

14.

Using Apollo to browse and edit genome annotations.

Misra S, Harris N.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5. doi: 10.1002/0471250953.bi0905s12.

PMID:
18428771
15.

A new approach for gene annotation using unambiguous sequence joining.

Tchourbanov A, Quest D, Ali H, Pauley M, Norgren R.

Proc IEEE Comput Soc Bioinform Conf. 2003;2:353-62.

PMID:
16452811
17.

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.

18.

PhyloPat: phylogenetic pattern analysis of eukaryotic genes.

Hulsen T, de Vlieg J, Groenen PM.

BMC Bioinformatics. 2006 Sep 1;7:398.

19.

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15. doi: 10.1002/0471250953.bi0115s16.

PMID:
18428779
20.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

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