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Metagenomics: Concept, methodology, ecological inference and recent advances.

Singh J, Behal A, Singla N, Joshi A, Birbian N, Singh S, Bali V, Batra N.

Biotechnol J. 2009 Apr;4(4):480-94. doi: 10.1002/biot.200800201. Review.

PMID:
19288513
3.

Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology.

Binga EK, Lasken RS, Neufeld JD.

ISME J. 2008 Mar;2(3):233-41. doi: 10.1038/ismej.2008.10. Epub 2008 Feb 7. Review.

PMID:
18256705
4.

Metagenomics for studying unculturable microorganisms: cutting the Gordian knot.

Schloss PD, Handelsman J.

Genome Biol. 2005;6(8):229. Epub 2005 Aug 1. Review.

5.

Updating the metagenomics toolbox.

Gabor E, Liebeton K, Niehaus F, Eck J, Lorenz P.

Biotechnol J. 2007 Feb;2(2):201-6. Review.

PMID:
17294408
6.

In-depth analyses of marine microbial community genomics.

Worden AZ, Cuvelier ML, Bartlett DH.

Trends Microbiol. 2006 Aug;14(8):331-6. Epub 2006 Jul 3. Review.

PMID:
16820296
7.

Metagenomics for mining new genetic resources of microbial communities.

Ferrer M, Beloqui A, Timmis KN, Golyshin PN.

J Mol Microbiol Biotechnol. 2009;16(1-2):109-23. doi: 10.1159/000142898. Epub 2008 Oct 29. Review.

8.

Advances in environmental genomics: towards an integrated view of micro-organisms and ecosystems.

Bertin PN, M├ędigue C, Normand P.

Microbiology. 2008 Feb;154(Pt 2):347-59. doi: 10.1099/mic.0.2007/011791-0. Review.

PMID:
18227239
9.

Microarray applications in microbial ecology research.

Gentry TJ, Wickham GS, Schadt CW, He Z, Zhou J.

Microb Ecol. 2006 Aug;52(2):159-75. Epub 2006 Aug 8. Review.

PMID:
16897303
10.

Functional metagenomics for enzyme discovery: challenges to efficient screening.

Uchiyama T, Miyazaki K.

Curr Opin Biotechnol. 2009 Dec;20(6):616-22. doi: 10.1016/j.copbio.2009.09.010. Epub 2009 Oct 21. Review.

PMID:
19850467
11.

Functional genomics-based studies of the microbial ecology of hyperthermophilic micro-organisms.

Johnson MR, Montero CI, Conners SB, Shockley KR, Pysz MA, Kelly RM.

Biochem Soc Trans. 2004 Apr;32(Pt 2):188-92. Review.

PMID:
15046569
12.

The future of microbial genomics.

Nelson KE.

Environ Microbiol. 2003 Dec;5(12):1223-5. No abstract available.

PMID:
14641569
13.

Microbial population genomics and ecology.

DeLong EF.

Curr Opin Microbiol. 2002 Oct;5(5):520-4. Review.

PMID:
12354561
14.

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.

Bhaya D, Grossman AR, Steunou AS, Khuri N, Cohan FM, Hamamura N, Melendrez MC, Bateson MM, Ward DM, Heidelberg JF.

ISME J. 2007 Dec;1(8):703-13. Epub 2007 Oct 25.

PMID:
18059494
15.

Ecotoxicogenomics: the challenge of integrating genomics into aquatic and terrestrial ecotoxicology.

Snape JR, Maund SJ, Pickford DB, Hutchinson TH.

Aquat Toxicol. 2004 Apr 14;67(2):143-54. Review.

PMID:
15003699
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17.

Population genomics in natural microbial communities.

Whitaker RJ, Banfield JF.

Trends Ecol Evol. 2006 Sep;21(9):508-16. Epub 2006 Jul 20. Review.

PMID:
16859806
18.

The next generation of microarray research: applications in evolutionary and ecological genomics.

Shiu SH, Borevitz JO.

Heredity (Edinb). 2008 Feb;100(2):141-9. Epub 2006 Nov 8. Review.

19.

Metagenomics: application of genomics to uncultured microorganisms.

Handelsman J.

Microbiol Mol Biol Rev. 2004 Dec;68(4):669-85. Review.

20.

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.

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