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Similar articles for PubMed (Select 16524462)

1.

TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes.

Horsman S, Moorhouse MJ, de Jager VC, van der Spek P, Grosveld F, Strouboulis J, Katsantoni EZ.

BMC Bioinformatics. 2006 Mar 8;7:120.

2.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

3.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

4.

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.

Hestand MS, van Galen M, Villerius MP, van Ommen GJ, den Dunnen JT, 't Hoen PA.

BMC Bioinformatics. 2008 Nov 26;9:495. doi: 10.1186/1471-2105-9-495.

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Identifying transcription factor binding sites through Markov chain optimization.

Ellrott K, Yang C, Sladek FM, Jiang T.

Bioinformatics. 2002;18 Suppl 2:S100-9.

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8.

Chromatin immunoprecipitation for identifying transcription factor targets in keratinocytes.

Ortt K, Sinha S.

Methods Mol Biol. 2010;585:159-70. doi: 10.1007/978-1-60761-380-0_12.

PMID:
19908003
9.

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.

BMC Bioinformatics. 2003 Jun 23;4:25. Epub 2003 Jun 23.

10.

Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer.

Eisermann K, Tandon S, Bazarov A, Brett A, Fraizer G, Piontkivska H.

BMC Genomics. 2008 Jul 16;9:337. doi: 10.1186/1471-2164-9-337.

11.

Computational detection of cis -regulatory modules.

Aerts S, Van Loo P, Thijs G, Moreau Y, De Moor B.

Bioinformatics. 2003 Oct;19 Suppl 2:ii5-14.

12.

GPAT: retrieval of genomic annotation from large genomic position datasets.

Krebs A, Frontini M, Tora L.

BMC Bioinformatics. 2008 Dec 15;9:533. doi: 10.1186/1471-2105-9-533.

13.

Database of repetitive elements in complete genomes and data mining using transcription factor binding sites.

Horng JT, Lin FM, Lin JH, Huang HD, Liu BJ.

IEEE Trans Inf Technol Biomed. 2003 Jun;7(2):93-100.

PMID:
12834164
14.

PhyloPat: phylogenetic pattern analysis of eukaryotic genes.

Hulsen T, de Vlieg J, Groenen PM.

BMC Bioinformatics. 2006 Sep 1;7:398.

15.

Using the NCBI Map Viewer to browse genomic sequence data.

Wolfsberg TG.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.5. doi: 10.1002/0471250953.bi0105s16.

PMID:
18428781
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18.

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9. doi: 10.1186/1471-2105-9-S2-S9.

19.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

20.

MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.

Tsai HK, Chou MY, Shih CH, Huang GT, Chang TH, Li WH.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W221-6. Epub 2007 May 30.

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