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Results: 1 to 20 of 269

1.

A bioinformatics perspective on proteomics: data storage, analysis, and integration.

Kremer A, Schneider R, Terstappen GC.

Biosci Rep. 2005 Feb-Apr;25(1-2):95-106. Review.

PMID:
16222422
[PubMed - indexed for MEDLINE]
Free Article
2.

Recent developments in public proteomic MS repositories and pipelines.

Mead JA, Bianco L, Bessant C.

Proteomics. 2009 Feb;9(4):861-81. doi: 10.1002/pmic.200800553. Review.

PMID:
19212957
[PubMed - indexed for MEDLINE]
3.

Do we want our data raw? Including binary mass spectrometry data in public proteomics data repositories.

Martens L, Nesvizhskii AI, Hermjakob H, Adamski M, Omenn GS, Vandekerckhove J, Gevaert K.

Proteomics. 2005 Aug;5(13):3501-5.

PMID:
16041670
[PubMed - indexed for MEDLINE]
4.

Proteomics in 2005/2006: developments, applications and challenges.

Smith JC, Lambert JP, Elisma F, Figeys D.

Anal Chem. 2007 Jun 15;79(12):4325-43. Epub 2007 May 4. Review. No abstract available.

PMID:
17477510
[PubMed - indexed for MEDLINE]
5.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
[PubMed - indexed for MEDLINE]
6.

Information management for proteomics: a perspective.

Wilkins MR, Arthur JW, Junius FK, Harrison MJ, Traini MD, Bizannes P, Doggett PE, McDonald W.

Expert Rev Proteomics. 2008 Oct;5(5):663-78. doi: 10.1586/14789450.5.5.663. Review.

PMID:
18937557
[PubMed - indexed for MEDLINE]
7.

Using ontologies in PROTEUS for modeling proteomics data mining applications.

Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P.

Stud Health Technol Inform. 2005;112:17-26.

PMID:
15923712
[PubMed - indexed for MEDLINE]
8.

The wildcat toolbox: a set of perl script utilities for use in peptide mass spectral database searching and proteomics experiments.

Haynes PA, Miller S, Radabaugh T, Galligan M, Breci L, Rohrbough J, Hickman F, Merchant N.

J Biomol Tech. 2006 Apr;17(2):97-102.

PMID:
16741236
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Bioinformatics and data mining in proteomics.

Haoudi A, Bensmail H.

Expert Rev Proteomics. 2006 Jun;3(3):333-43. Review.

PMID:
16771705
[PubMed - indexed for MEDLINE]
10.

A systematic approach to modeling, capturing, and disseminating proteomics experimental data.

Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG.

Nat Biotechnol. 2003 Mar;21(3):247-54.

PMID:
12610571
[PubMed - indexed for MEDLINE]
11.

PepSeeker: mining information from proteomic data.

Siepen JA, Selley JN, Hubbard SJ.

Methods Mol Biol. 2008;484:319-32. doi: 10.1007/978-1-59745-398-1_21.

PMID:
18592189
[PubMed - indexed for MEDLINE]
12.

Bioinformatics in proteomics.

Blueggel M, Chamrad D, Meyer HE.

Curr Pharm Biotechnol. 2004 Feb;5(1):79-88. Review.

PMID:
14965211
[PubMed - indexed for MEDLINE]
13.

Bioinformatics strategies in life sciences: from data processing and data warehousing to biological knowledge extraction.

Thiele H, Glandorf J, Hufnagel P.

J Integr Bioinform. 2010 May 27;7(1):141. doi: 10.2390/biecoll-jib-2010-141.

PMID:
20508300
[PubMed - indexed for MEDLINE]
14.

Methods, algorithms and tools in computational proteomics: a practical point of view.

Matthiesen R.

Proteomics. 2007 Aug;7(16):2815-32. Review.

PMID:
17703506
[PubMed - indexed for MEDLINE]
15.

Using Laboratory Information Management Systems as central part of a proteomics data workflow.

Stephan C, Kohl M, Turewicz M, Podwojski K, Meyer HE, Eisenacher M.

Proteomics. 2010 Mar;10(6):1230-49. doi: 10.1002/pmic.200900420. Review.

PMID:
20077413
[PubMed - indexed for MEDLINE]
16.

Protein kinase resource: an integrated environment for phosphorylation research.

Niedner RH, Buzko OV, Haste NM, Taylor A, Gribskov M, Taylor SS.

Proteins. 2006 Apr 1;63(1):78-86.

PMID:
16435372
[PubMed - indexed for MEDLINE]
17.

A multi-layered approach to protein data integration for diabetes research.

McGarry K, Chambers J, Oatley G.

Artif Intell Med. 2007 Oct;41(2):129-43. Epub 2007 Sep 14.

PMID:
17869073
[PubMed - indexed for MEDLINE]
18.

Proteomics: technologies for protein analysis.

Gomase VS, Kale KV, Tagore S, Hatture SR.

Curr Drug Metab. 2008 Mar;9(3):213-20. Review.

PMID:
18336224
[PubMed - indexed for MEDLINE]
19.

Open source system for analyzing, validating, and storing protein identification data.

Craig R, Cortens JP, Beavis RC.

J Proteome Res. 2004 Nov-Dec;3(6):1234-42.

PMID:
15595733
[PubMed - indexed for MEDLINE]
20.

Proteomics FASTA archive and reference resource.

Falkner JA, Hill JA, Andrews PC.

Proteomics. 2008 May;8(9):1756-7. doi: 10.1002/pmic.200701194.

PMID:
18442177
[PubMed - indexed for MEDLINE]

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