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Results: 1 to 20 of 100

1.

Environments shape the nucleotide composition of genomes.

Foerstner KU, von Mering C, Hooper SD, Bork P.

EMBO Rep. 2005 Dec;6(12):1208-13.

PMID:
16200051
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

On the organizational dynamics of the genetic code.

Zhang Z, Yu J.

Genomics Proteomics Bioinformatics. 2011 Apr;9(1-2):21-9. doi: 10.1016/S1672-0229(11)60004-1.

PMID:
21641559
[PubMed - indexed for MEDLINE]
Free Article
3.

Evolution of complete proteomes: guanine-cytosine pressure, phylogeny and environmental influences blend the proteomic architecture.

Chen W, Shao Y, Chen F.

BMC Evol Biol. 2013 Oct 3;13:219. doi: 10.1186/1471-2148-13-219.

PMID:
24088322
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Relative amino acid composition signatures of organisms and environments.

Moura A, Savageau MA, Alves R.

PLoS One. 2013 Oct 25;8(10):e77319. doi: 10.1371/journal.pone.0077319. eCollection 2013.

PMID:
24204807
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

Knight RD, Freeland SJ, Landweber LF.

Genome Biol. 2001;2(4):RESEARCH0010. Epub 2001 Mar 22.

PMID:
11305938
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes.

Hurst LD, Merchant AR.

Proc Biol Sci. 2001 Mar 7;268(1466):493-7.

PMID:
11296861
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GC content-independent amino acid patterns in bacteria and archaea.

Schmidt A, Rzanny M, Schmidt A, Hagen M, Sch├╝tze E, Kothe E.

J Basic Microbiol. 2012 Apr;52(2):195-205. doi: 10.1002/jobm.201100067. Epub 2011 Jul 21.

PMID:
21780150
[PubMed - indexed for MEDLINE]
8.

Community-wide analysis of microbial genome sequence signatures.

Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF.

Genome Biol. 2009;10(8):R85. doi: 10.1186/gb-2009-10-8-r85. Epub 2009 Aug 21.

PMID:
19698104
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Community structure and metabolism through reconstruction of microbial genomes from the environment.

Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF.

Nature. 2004 Mar 4;428(6978):37-43. Epub 2004 Feb 1.

PMID:
14961025
[PubMed - indexed for MEDLINE]
10.

Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis.

Tekaia F, Yeramian E, Dujon B.

Gene. 2002 Sep 4;297(1-2):51-60.

PMID:
12384285
[PubMed - indexed for MEDLINE]
11.

Low-pass sequencing for microbial comparative genomics.

Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, Kennedy S, DasSarma S, Ng WV, Hood L.

BMC Genomics. 2004 Jan 12;5(1):3.

PMID:
14718067
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

Singer GA, Hickey DA.

Gene. 2003 Oct 23;317(1-2):39-47.

PMID:
14604790
[PubMed - indexed for MEDLINE]
13.

Role of mutational bias and natural selection on genome-wide nucleotide bias in prokaryotic organisms.

Banerjee T, Gupta SK, Ghosh TC.

Biosystems. 2005 Jul;81(1):11-8.

PMID:
15917123
[PubMed - indexed for MEDLINE]
14.

Oxygen and guanine-cytosine profiles in marine environments.

Romero H, Pereira E, Naya H, Musto H.

J Mol Evol. 2009 Aug;69(2):203-6. doi: 10.1007/s00239-009-9230-9. Epub 2009 Jun 25.

PMID:
19554248
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of thermophilic species by the amino acid compositions deduced from their genomes.

Kreil DP, Ouzounis CA.

Nucleic Acids Res. 2001 Apr 1;29(7):1608-15.

PMID:
11266564
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Compositional dynamics of guanine and cytosine content in prokaryotic genomes.

Hu J, Zhao X, Zhang Z, Yu J.

Res Microbiol. 2007 May;158(4):363-70. Epub 2007 Mar 6.

PMID:
17449227
[PubMed - indexed for MEDLINE]
17.

Insights into bacterial genome composition through variable target GC content profiling.

Mann S, Li J, Chen YP.

J Comput Biol. 2010 Jan;17(1):79-96. doi: 10.1089/cmb.2009.0058.

PMID:
20078399
[PubMed - indexed for MEDLINE]
18.

Genome-wide patterns of nucleotide substitution reveal stringent functional constraints on the protein sequences of thermophiles.

Friedman R, Drake JW, Hughes AL.

Genetics. 2004 Jul;167(3):1507-12.

PMID:
15280258
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Nucleotide distribution in gymnosperm nuclear sequences suggests a model for GC-content change in land-plant nuclear genomes.

Jansson S, Meyer-Gauen G, Cerff R, Martin W.

J Mol Evol. 1994 Jul;39(1):34-46.

PMID:
8064871
[PubMed - indexed for MEDLINE]
20.

The evolution of genomic base composition in bacteria.

Haywood-Farmer E, Otto SP.

Evolution. 2003 Aug;57(8):1783-92.

PMID:
14503620
[PubMed - indexed for MEDLINE]

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