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Results: 1 to 20 of 443

1.

Signal transduction networks: topology, response and biochemical processes.

Soyer OS, Salathé M, Bonhoeffer S.

J Theor Biol. 2006 Jan 21;238(2):416-25. Epub 2005 Jul 20.

PMID:
16045939
[PubMed - indexed for MEDLINE]
2.

A systems biology perspective on protein structural dynamics and signal transduction.

Rousseau F, Schymkowitz J.

Curr Opin Struct Biol. 2005 Feb;15(1):23-30. Review.

PMID:
15718129
[PubMed - indexed for MEDLINE]
3.

Architecture of basic building blocks in protein and domain structural interaction networks.

Moon HS, Bhak J, Lee KH, Lee D.

Bioinformatics. 2005 Apr 15;21(8):1479-86. Epub 2004 Dec 21.

PMID:
15613386
[PubMed - indexed for MEDLINE]
Free Article
4.

Emergent criticality from coevolution in random Boolean networks.

Liu M, Bassler KE.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct;74(4 Pt 1):041910. Epub 2006 Oct 17.

PMID:
17155099
[PubMed - indexed for MEDLINE]
5.

Create and assess protein networks through molecular characteristics of individual proteins.

Ofran Y, Yachdav G, Mozes E, Soong TT, Nair R, Rost B.

Bioinformatics. 2006 Jul 15;22(14):e402-7.

PMID:
16873500
[PubMed - indexed for MEDLINE]
Free Article
6.

Statistical and integrative approach for constructing biological network maps.

Kurata H, Shimizu N, Misumi K.

Genome Inform. 2004;15(2):161-70.

PMID:
15706502
[PubMed - indexed for MEDLINE]
7.

Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy.

Andrec M, Kholodenko BN, Levy RM, Sontag E.

J Theor Biol. 2005 Feb 7;232(3):427-41.

PMID:
15572066
[PubMed - indexed for MEDLINE]
8.

Dynamic simulation of regulatory networks using SQUAD.

Di Cara A, Garg A, De Micheli G, Xenarios I, Mendoza L.

BMC Bioinformatics. 2007 Nov 26;8:462.

PMID:
18039375
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Asymptotic states and topological structure of an activation-deactivation chemical network.

Martelli C, Giansanti A, Arisi I, Rosato V.

J Theor Biol. 2007 Apr 7;245(3):423-32. Epub 2006 Oct 11.

PMID:
17188303
[PubMed - indexed for MEDLINE]
10.

ProtNet: a tool for stochastic simulations of protein interaction networks dynamics.

Bernaschi M, Castiglione F, Ferranti A, Gavrila C, Tinti M, Cesareni G.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S4.

PMID:
17430571
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reconstructing gene regulatory networks: from random to scale-free connectivity.

Wildenhain J, Crampin EJ.

Syst Biol (Stevenage). 2006 Jul;153(4):247-56.

PMID:
16986626
[PubMed - indexed for MEDLINE]
12.

Simulating the evolution of signal transduction pathways.

Soyer OS, Pfeiffer T, Bonhoeffer S.

J Theor Biol. 2006 Jul 21;241(2):223-32. Epub 2006 Jan 5.

PMID:
16403533
[PubMed - indexed for MEDLINE]
13.

Expansion of signal transduction networks.

Binder B, Ebenhöh O, Hashimoto K, Heinrich R.

Syst Biol (Stevenage). 2006 Sep;153(5):364-8.

PMID:
16986318
[PubMed - indexed for MEDLINE]
14.

Determination of critical network interactions: an augmented Boolean pseudo-dynamics approach.

Soni AS, Jenkins JW, Sundaram SS.

IET Syst Biol. 2008 Mar;2(2):55-63. doi: 10.1049/iet-syb:20070025.

PMID:
18397116
[PubMed - indexed for MEDLINE]
15.

Functional and evolutionary inference in gene networks: does topology matter?

Siegal ML, Promislow DE, Bergman A.

Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

PMID:
16897451
[PubMed - indexed for MEDLINE]
16.

Design principles of a bacterial signalling network.

Kollmann M, Løvdok L, Bartholomé K, Timmer J, Sourjik V.

Nature. 2005 Nov 24;438(7067):504-7.

PMID:
16306993
[PubMed - indexed for MEDLINE]
17.

Scale-free networks in cell biology.

Albert R.

J Cell Sci. 2005 Nov 1;118(Pt 21):4947-57. Review.

PMID:
16254242
[PubMed - indexed for MEDLINE]
Free Article
18.

Protein evolution on a human signaling network.

Cui Q, Purisima EO, Wang E.

BMC Syst Biol. 2009 Feb 18;3:21. doi: 10.1186/1752-0509-3-21.

PMID:
19226461
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Augmented sparse reconstruction of protein signaling networks.

Napoletani D, Sauer T, Struppa DC, Petricoin E, Liotta L.

J Theor Biol. 2008 Nov 7;255(1):40-52. doi: 10.1016/j.jtbi.2008.07.026. Epub 2008 Jul 25.

PMID:
18706918
[PubMed - indexed for MEDLINE]
20.

What makes biochemical networks tick?

Goldstein BN, Ermakov G, Centelles JJ, Westerhoff HV, Cascante M.

Eur J Biochem. 2004 Oct;271(19):3877-87. Erratum in: Eur J Biochem. 2004 Nov;271(21):4332.

PMID:
15373833
[PubMed - indexed for MEDLINE]
Free Article

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