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Results: 1 to 20 of 100

1.

Genomes, phylogeny, and evolutionary systems biology.

Medina M.

Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6630-5. Epub 2005 Apr 25. Review.

PMID:
15851668
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Underlying principles of natural selection in network evolution: systems biology approach.

Chen BS, Wu WS.

Evol Bioinform Online. 2007 Sep 26;3:245-62.

PMID:
19468310
[PubMed]
Free PMC Article
3.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID:
14759257
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genomics of the fungal kingdom: insights into eukaryotic biology.

Galagan JE, Henn MR, Ma LJ, Cuomo CA, Birren B.

Genome Res. 2005 Dec;15(12):1620-31. Review. Erratum in: Genome Res. 2006 Feb;16(2):304.

PMID:
16339359
[PubMed - indexed for MEDLINE]
Free Article
5.

Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes.

Ren Q, Paulsen IT.

PLoS Comput Biol. 2005 Aug;1(3):e27. Epub 2005 Aug 19.

PMID:
16118665
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comprehensive analysis of the origin of eukaryotic genomes.

Saruhashi S, Hamada K, Miyata D, Horiike T, Shinozawa T.

Genes Genet Syst. 2008 Aug;83(4):285-91.

PMID:
18931454
[PubMed - indexed for MEDLINE]
Free Article
7.

Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms.

Ball CA, Cherry JM.

Curr Opin Chem Biol. 2001 Feb;5(1):86-9. Review.

PMID:
11166654
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome.

Irimia M, Roy SW.

PLoS Genet. 2008 Aug 8;4(8):e1000148. doi: 10.1371/journal.pgen.1000148.

PMID:
18688272
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Chronoastrobiology: proposal, nine conferences, heliogeomagnetics, transyears, near-weeks, near-decades, phylogenetic and ontogenetic memories.

Halberg F, Cornélissen G, Regal P, Otsuka K, Wang Z, Katinas GS, Siegelova J, Homolka P, Prikryl P, Chibisov SM, Holley DC, Wendt HW, Bingham C, Palm SL, Sonkowsky RP, Sothern RB, Pales E, Mikulecky M, Tarquini R, Perfetto F, Salti R, Maggioni C, Jozsa R, Konradov AA, Kharlitskaya EV, Revillam M, Wan C, Herold M, Syutkina EV, Masalov AV, Faraone P, Singh RB, Singh RK, Kumar A, Singhs R, Sundaram S, Sarabandi T, Pantaleoni G, Watanabe Y, Kumagai Y, Gubin D, Uezono K, Olah A, Borer K, Kanabrockia EA, Bathina S, Haus E, Hillman D, Schwartzkopff O, Bakken EE, Zeman M.

Biomed Pharmacother. 2004 Oct;58 Suppl 1:S150-87.

PMID:
15754855
[PubMed - indexed for MEDLINE]
10.

Genome and protein evolution in eukaryotes.

Copley RR, Letunic I, Bork P.

Curr Opin Chem Biol. 2002 Feb;6(1):39-45. Review.

PMID:
11827821
[PubMed - indexed for MEDLINE]
11.

Origin of multicellular eukaryotes - insights from proteome comparisons.

Aravind L, Subramanian G.

Curr Opin Genet Dev. 1999 Dec;9(6):688-94. Review.

PMID:
10607613
[PubMed - indexed for MEDLINE]
12.

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes.

Iyer LM, Anantharaman V, Wolf MY, Aravind L.

Int J Parasitol. 2008 Jan;38(1):1-31. Epub 2007 Sep 15. Review.

PMID:
17949725
[PubMed - indexed for MEDLINE]
Free Article
13.

Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

Weckwerth W.

J Proteomics. 2011 Dec 10;75(1):284-305. doi: 10.1016/j.jprot.2011.07.010. Epub 2011 Jul 23. Review.

PMID:
21802534
[PubMed - indexed for MEDLINE]
Free Article
14.

Non-coding RNAs: new players in eukaryotic biology.

Costa FF.

Gene. 2005 Sep 12;357(2):83-94. Review.

PMID:
16111837
[PubMed - indexed for MEDLINE]
15.

Evolutionary biology: bridge over troublesome plastids.

Keeling PJ.

Nature. 2008 Feb 21;451(7181):896-7. doi: 10.1038/451896a. No abstract available.

PMID:
18288173
[PubMed - indexed for MEDLINE]
16.

Phylogenetic profiles for the prediction of protein-protein interactions: how to select reference organisms?

Sun J, Li Y, Zhao Z.

Biochem Biophys Res Commun. 2007 Feb 23;353(4):985-91. Epub 2006 Dec 27.

PMID:
17207465
[PubMed - indexed for MEDLINE]
17.

The origin of eukaryotes: the difference between prokaryotic and eukaryotic cells.

Vellai T, Vida G.

Proc Biol Sci. 1999 Aug 7;266(1428):1571-7. Review.

PMID:
10467746
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome reduction in the alpha-Proteobacteria.

Sällström B, Andersson SG.

Curr Opin Microbiol. 2005 Oct;8(5):579-85. Review.

PMID:
16099701
[PubMed - indexed for MEDLINE]
19.

The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

PMID:
12969510
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Perspectives on future applications of experimental biology to evolution.

Zimmer EA.

EXS. 1994;69:607-16.

PMID:
7994127
[PubMed - indexed for MEDLINE]

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