Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 70

1.

gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation.

Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC.

Metab Eng. 2005 Mar;7(2):128-41.

PMID:
15781421
[PubMed - indexed for MEDLINE]
2.

A generalized framework for network component analysis.

Boscolo R, Sabatti C, Liao JC, Roychowdhury VP.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Oct-Dec;2(4):289-301.

PMID:
17044167
[PubMed - indexed for MEDLINE]
3.

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.

Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A.

BMC Syst Biol. 2009 Apr 14;3:39. doi: 10.1186/1752-0509-3-39.

PMID:
19366454
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

BMC Microbiol. 2007 Jun 8;7:53.

PMID:
17559662
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Effect of the arcA mutation on the expression of flagella genes in Escherichia coli.

Kato Y, Sugiura M, Mizuno T, Aiba H.

Biosci Biotechnol Biochem. 2007 Jan;71(1):77-83. Epub 2007 Jan 7.

PMID:
17213678
[PubMed - indexed for MEDLINE]
Free Article
6.

Negative regulation of DNA repair gene (uvrA) expression by ArcA/ArcB two-component system in Escherichia coli.

Ogasawara H, Teramoto J, Yamamoto S, Hirao K, Yamamoto K, Ishihama A, Utsumi R.

FEMS Microbiol Lett. 2005 Oct 15;251(2):243-9.

PMID:
16140472
[PubMed - indexed for MEDLINE]
7.

Effect of ArcA and FNR on the expression of genes related to the oxygen regulation and the glycolysis pathway in Escherichia coli under microaerobic growth conditions.

Shalel-Levanon S, San KY, Bennett GN.

Biotechnol Bioeng. 2005 Oct 20;92(2):147-59.

PMID:
15988767
[PubMed - indexed for MEDLINE]
8.

Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis.

Chen SF, Juang YL, Chou WK, Lai JM, Huang CY, Kao CY, Wang FS.

BMC Syst Biol. 2009 Nov 27;3:110. doi: 10.1186/1752-0509-3-110.

PMID:
19943917
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis.

Kao KC, Yang YL, Boscolo R, Sabatti C, Roychowdhury V, Liao JC.

Proc Natl Acad Sci U S A. 2004 Jan 13;101(2):641-6. Epub 2003 Dec 23.

PMID:
14694202
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An integrated network approach identifies the isobutanol response network of Escherichia coli.

Brynildsen MP, Liao JC.

Mol Syst Biol. 2009;5:277. doi: 10.1038/msb.2009.34. Epub 2009 Jun 16.

PMID:
19536200
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA.

Cho BK, Knight EM, Palsson BØ.

Microbiology. 2006 Aug;152(Pt 8):2207-19.

PMID:
16849788
[PubMed - indexed for MEDLINE]
Free Article
12.

ArcA redox mutants as a source of reduced bioproducts.

Pettinari MJ, Nikel PI, Ruiz JA, Méndez BS.

J Mol Microbiol Biotechnol. 2008;15(1):41-7. doi: 10.1159/000111991. Epub 2008 Mar 14.

PMID:
18349549
[PubMed - indexed for MEDLINE]
13.

Fast network component analysis (FastNCA) for gene regulatory network reconstruction from microarray data.

Chang C, Ding Z, Hung YS, Fung PC.

Bioinformatics. 2008 Jun 1;24(11):1349-58. doi: 10.1093/bioinformatics/btn131. Epub 2008 Apr 9.

PMID:
18400771
[PubMed - indexed for MEDLINE]
Free Article
14.

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

Covert MW, Xiao N, Chen TJ, Karr JR.

Bioinformatics. 2008 Sep 15;24(18):2044-50. doi: 10.1093/bioinformatics/btn352. Epub 2008 Jul 10.

PMID:
18621757
[PubMed - indexed for MEDLINE]
Free Article
15.

Effect of the global redox sensing/regulation networks on Escherichia coli and metabolic flux distribution based on C-13 labeling experiments.

Zhu J, Shalel-Levanon S, Bennett G, San KY.

Metab Eng. 2006 Nov;8(6):619-27. Epub 2006 Aug 7.

PMID:
16962353
[PubMed - indexed for MEDLINE]
16.

Effect of oxygen, and ArcA and FNR regulators on the expression of genes related to the electron transfer chain and the TCA cycle in Escherichia coli.

Shalel-Levanon S, San KY, Bennett GN.

Metab Eng. 2005 Sep-Nov;7(5-6):364-74. Epub 2005 Sep 2.

PMID:
16140031
[PubMed - indexed for MEDLINE]
17.

Determination of functional interactions among signalling pathways in Escherichia coli K-12.

Yang YL, Liao JC.

Metab Eng. 2005 Jul;7(4):280-90.

PMID:
16002309
[PubMed - indexed for MEDLINE]
18.

Transcriptional regulation and metabolism.

Brynildsen MP, Wong WW, Liao JC.

Biochem Soc Trans. 2005 Dec;33(Pt 6):1423-6.

PMID:
16246136
[PubMed - indexed for MEDLINE]
19.

A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis.

Kao KC, Tran LM, Liao JC.

J Biol Chem. 2005 Oct 28;280(43):36079-87. Epub 2005 Aug 31.

PMID:
16141204
[PubMed - indexed for MEDLINE]
Free Article
20.

Elementary network reconstruction: a framework for the analysis of regulatory networks in biological systems.

Dharmadi Y, Gonzalez R.

J Theor Biol. 2010 Apr 21;263(4):499-509. doi: 10.1016/j.jtbi.2009.12.007. Epub 2009 Dec 22.

PMID:
20004670
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk