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Results: 1 to 20 of 141

Related Citations for PubMed (Select 15390266)

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Refinement of NMR structures using implicit solvent and advanced sampling techniques.

Chen J, Im W, Brooks CL 3rd.

J Am Chem Soc. 2004 Dec 15;126(49):16038-47.

PMID:
15584737
5.

Prediction of conformation of rat galanin in the presence and absence of water with the use of Monte Carlo methods and the ECEPP/3 force field.

Liwo A, OƂdziej S, Ciarkowski J, Kupryszewski G, Pincus MR, Wawak RJ, Rackovsky S, Scheraga HA.

J Protein Chem. 1994 May;13(4):375-80.

PMID:
7527217
6.

Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions.

Olson MA, Feig M, Brooks CL 3rd.

J Comput Chem. 2008 Apr 15;29(5):820-31.

PMID:
17876760
8.

Trp-cage: folding free energy landscape in explicit water.

Zhou R.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13280-5. Epub 2003 Oct 27.

10.

Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.

Yeh IC, Lee MS, Olson MA.

J Phys Chem B. 2008 Nov 27;112(47):15064-73. doi: 10.1021/jp802469g.

PMID:
18959439
11.

Computational study of the Trp-cage miniprotein based on the ECEPP/3 force field.

Zhan L, Chen JZ, Liu WK.

Proteins. 2007 Feb 1;66(2):436-43.

PMID:
17094111
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Computational study of the free energy landscape of the miniprotein CLN025 in explicit and implicit solvent.

Rodriguez A, Mokoema P, Corcho F, Bisetty K, Perez JJ.

J Phys Chem B. 2011 Feb 17;115(6):1440-9. doi: 10.1021/jp106475c. Epub 2011 Jan 21.

PMID:
21254763
15.

Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations.

Ono S, Kuroda M, Higo J, Nakajima N, Nakamura H.

J Comput Chem. 2002 Mar;23(4):470-6.

PMID:
11908083
16.

A test of implicit solvent models on the folding simulation of the GB1 peptide.

Shao Q, Yang L, Gao YQ.

J Chem Phys. 2009 May 21;130(19):195104. doi: 10.1063/1.3132850.

PMID:
19466868
17.

Structure and dynamics of end-to-end loop formation of the penta-peptide Cys-Ala-Gly-Gln-Trp in implicit solvents.

Yeh IC, Wallqvist A.

J Phys Chem B. 2009 Sep 10;113(36):12382-90. doi: 10.1021/jp904064z.

PMID:
19685925
18.

A hierarchical approach to all-atom protein loop prediction.

Jacobson MP, Pincus DL, Rapp CS, Day TJ, Honig B, Shaw DE, Friesner RA.

Proteins. 2004 May 1;55(2):351-67.

PMID:
15048827
20.

Simulation of peptide folding with explicit water--a mean solvation method.

Wu XW, Sung SS.

Proteins. 1999 Feb 15;34(3):295-302.

PMID:
10024017
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