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Items: 1 to 20 of 235

1.

DEQOR: a web-based tool for the design and quality control of siRNAs.

Henschel A, Buchholz F, Habermann B.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W113-20.

2.

AsiDesigner: exon-based siRNA design server considering alternative splicing.

Park YK, Park SM, Choi YC, Lee D, Won M, Kim YJ.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W97-103. doi: 10.1093/nar/gkn280. Epub 2008 May 14.

3.

RNA interference by mixtures of siRNAs prepared using custom oligonucleotide arrays.

Oleinikov AV, Zhao J, Gray MD.

Nucleic Acids Res. 2005 Jun 7;33(10):e92.

4.

MISSION esiRNA for RNAi screening in mammalian cells.

Theis M, Buchholz F.

J Vis Exp. 2010 May 12;(39). pii: 2008. doi: 10.3791/2008.

5.

Gene silencing mediated by small interfering RNAs in mammalian cells.

Scherr M, Morgan MA, Eder M.

Curr Med Chem. 2003 Feb;10(3):245-56. Review.

PMID:
12570711
6.

A computational study of off-target effects of RNA interference.

Qiu S, Adema CM, Lane T.

Nucleic Acids Res. 2005 Mar 30;33(6):1834-47. Print 2005.

7.

Selection of hyperfunctional siRNAs with improved potency and specificity.

Wang X, Wang X, Varma RK, Beauchamp L, Magdaleno S, Sendera TJ.

Nucleic Acids Res. 2009 Dec;37(22):e152. doi: 10.1093/nar/gkp864. Epub .

8.

Production of Endoribonuclease-Prepared Short Interfering RNAs (esiRNAs) for Specific and Effective Gene Silencing in Mammalian Cells.

Heninger AK, Buchholz F.

CSH Protoc. 2007 Aug 1;2007:pdb.prot4824. doi: 10.1101/pdb.prot4824.

PMID:
21357149
9.
10.

RNA interference: the molecular immune system.

Bagasra O, Prilliman KR.

J Mol Histol. 2004 Aug;35(6):545-53. Review.

PMID:
15614608
11.

Highly specific and accurate selection of siRNAs for high-throughput functional assays.

Santoyo J, Vaquerizas JM, Dopazo J.

Bioinformatics. 2005 Apr 15;21(8):1376-82. Epub 2004 Dec 10.

12.

sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.

Shah JK, Garner HR, White MA, Shames DS, Minna JD.

BMC Bioinformatics. 2007 May 31;8:178.

13.

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.

Naito Y, Yamada T, Matsumiya T, Ui-Tei K, Saigo K, Morishita S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W589-91.

14.

Computational siRNA design considering alternative splicing.

Kim YJ.

Methods Mol Biol. 2010;623:81-92. doi: 10.1007/978-1-60761-588-0_5.

PMID:
20217545
15.

Using OligoWalk to identify efficient siRNA sequences.

Mathews DH.

Methods Mol Biol. 2010;629:109-21. doi: 10.1007/978-1-60761-657-3_8.

PMID:
20387146
16.

OptiRNAi, an RNAi design tool.

Cui W, Ning J, Naik UP, Duncan MK.

Comput Methods Programs Biomed. 2004 Jul;75(1):67-73.

PMID:
15158049
17.

E-RNAi: a web application to design optimized RNAi constructs.

Arziman Z, Horn T, Boutros M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W582-8.

18.

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Naito Y, Yamada T, Ui-Tei K, Morishita S, Saigo K.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W124-9.

19.

On the art of identifying effective and specific siRNAs.

Pei Y, Tuschl T.

Nat Methods. 2006 Sep;3(9):670-6. Review.

PMID:
16929310
20.

Construction of simple and efficient DNA vector-based short hairpin RNA expression systems for specific gene silencing in mammalian cells.

Cheng TL, Chang WT.

Methods Mol Biol. 2007;408:223-41. doi: 10.1007/978-1-59745-547-3_13.

PMID:
18314586
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