Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 112

Related Citations for PubMed (Select 15155852)

1.
2.

Variable gap penalty for protein sequence-structure alignment.

Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A.

Protein Eng Des Sel. 2006 Mar;19(3):129-33. Epub 2006 Jan 19.

3.

Distribution of Indel lengths.

Qian B, Goldstein RA.

Proteins. 2001 Oct 1;45(1):102-4.

PMID:
11536366
4.

A generalized affine gap model significantly improves protein sequence alignment accuracy.

Zachariah MA, Crooks GE, Holbrook SR, Brenner SE.

Proteins. 2005 Feb 1;58(2):329-38.

PMID:
15562515
5.
6.
7.

Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.

Wang C, Yan RX, Wang XF, Si JN, Zhang Z.

Comput Biol Chem. 2011 Oct 12;35(5):308-18. doi: 10.1016/j.compbiolchem.2011.07.006. Epub 2011 Jul 22.

PMID:
22000802
8.

SE: an algorithm for deriving sequence alignment from a pair of superimposed structures.

Tai CH, Vincent JJ, Kim C, Lee B.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S4. doi: 10.1186/1471-2105-10-S1-S4.

9.

Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

Benner SA, Cohen MA, Gonnet GH.

J Mol Biol. 1993 Feb 20;229(4):1065-82.

PMID:
8445636
11.
12.

A variable gap penalty function and feature weights for protein 3-D structure comparisons.

Zhu ZY, Sali A, Blundell TL.

Protein Eng. 1992 Jan;5(1):43-51.

PMID:
1631045
13.

Flexible sequence similarity searching with the FASTA3 program package.

Pearson WR.

Methods Mol Biol. 2000;132:185-219.

PMID:
10547837
14.

Identifying sequence-structure pairs undetected by sequence alignments.

Miyazawa S, Jernigan RL.

Protein Eng. 2000 Jul;13(7):459-75.

15.

Local sequence alignments with monotonic gap penalties.

Mott R.

Bioinformatics. 1999 Jun;15(6):455-62.

16.

Local multiple alignment by consensus matrix.

Alexandrov NN.

Comput Appl Biosci. 1992 Aug;8(4):339-45.

PMID:
1498689
17.

A non-local gap-penalty for profile alignment.

Taylor WR.

Bull Math Biol. 1996 Jan;58(1):1-18.

PMID:
8819751
18.

Estimation of P-values for global alignments of protein sequences.

Webber C, Barton GJ.

Bioinformatics. 2001 Dec;17(12):1158-67.

19.
20.

Comparative analysis of protein structure alignments.

Mayr G, Domingues FS, Lackner P.

BMC Struct Biol. 2007 Jul 26;7:50.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk