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Items: 1 to 20 of 49

1.

Structure, function and evolution of multidomain proteins.

Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA.

Curr Opin Struct Biol. 2004 Apr;14(2):208-16. Review.

PMID:
15093836
2.

Supra-domains: evolutionary units larger than single protein domains.

Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA.

J Mol Biol. 2004 Feb 20;336(3):809-23.

PMID:
15095989
3.
4.

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Redfern OC, Harrison A, Dallman T, Pearl FM, Orengo CA.

PLoS Comput Biol. 2007 Nov;3(11):e232.

5.

The geometry of domain combination in proteins.

Bashton M, Chothia C.

J Mol Biol. 2002 Jan 25;315(4):927-39.

PMID:
11812158
6.

The relationship between domain duplication and recombination.

Vogel C, Teichmann SA, Pereira-Leal J.

J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.

PMID:
15663950
7.

Diversity and evolution of the thyroglobulin type-1 domain superfamily.

Novinec M, Kordis D, Turk V, Lenarcic B.

Mol Biol Evol. 2006 Apr;23(4):744-55. Epub 2005 Dec 20.

8.

The evolution of domain arrangements in proteins and interaction networks.

Bornberg-Bauer E, Beaussart F, Kummerfeld SK, Teichmann SA, Weiner J 3rd.

Cell Mol Life Sci. 2005 Feb;62(4):435-45. Review.

PMID:
15719170
9.

SCOPEC: a database of protein catalytic domains.

George RA, Spriggs RV, Thornton JM, Al-Lazikani B, Swindells MB.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i130-6.

10.

indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.

Strope CL, Scott SD, Moriyama EN.

Mol Biol Evol. 2007 Mar;24(3):640-9. Epub 2006 Dec 8.

11.

The evolutionary history of protein domains viewed by species phylogeny.

Yang S, Bourne PE.

PLoS One. 2009 Dec 21;4(12):e8378. doi: 10.1371/journal.pone.0008378.

12.

Global phylogeny determined by the combination of protein domains in proteomes.

Wang M, Caetano-Anollés G.

Mol Biol Evol. 2006 Dec;23(12):2444-54. Epub 2006 Sep 13.

13.

Modules, multidomain proteins and organismic complexity.

Tordai H, Nagy A, Farkas K, Bányai L, Patthy L.

FEBS J. 2005 Oct;272(19):5064-78.

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Quantification of the elevated rate of domain rearrangements in metazoa.

Ekman D, Björklund AK, Elofsson A.

J Mol Biol. 2007 Oct 5;372(5):1337-48. Epub 2007 Jun 15.

PMID:
17689563
17.

Enhanced structure prediction of gene products containing class III adenylyl cyclase domains.

Reddy CS, Manonmani A, Babu M, Sowdhamini R.

In Silico Biol. 2006;6(5):351-62.

PMID:
17274764
18.

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.

Nacher JC, Hayashida M, Akutsu T.

Biosystems. 2009 Feb;95(2):155-9. doi: 10.1016/j.biosystems.2008.10.002. Epub 2008 Nov 1.

PMID:
19010382
19.

Function and molecular evolution of multicopper blue proteins.

Nakamura K, GO N.

Cell Mol Life Sci. 2005 Sep;62(18):2050-66. Review.

PMID:
16091847
20.

Arrangements in the modular evolution of proteins.

Moore AD, Björklund AK, Ekman D, Bornberg-Bauer E, Elofsson A.

Trends Biochem Sci. 2008 Sep;33(9):444-51. doi: 10.1016/j.tibs.2008.05.008. Epub 2008 Jul 24. Review.

PMID:
18656364
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