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Results: 1 to 20 of 162

Similar articles for PubMed (Select 14871866)

1.

eF-site and PDBjViewer: database and viewer for protein functional sites.

Kinoshita K, Nakamura H.

Bioinformatics. 2004 May 22;20(8):1329-30. Epub 2004 Feb 10.

2.

eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.

Kinoshita K, Murakami Y, Nakamura H.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W398-402. Epub 2007 Jun 12.

3.

BRAGI: linking and visualization of database information in a 3D viewer and modeling tool.

Reichelt J, Dieterich G, Kvesic M, Schomburg D, Heinz DW.

Bioinformatics. 2005 Apr 1;21(7):1291-3. Epub 2004 Nov 16.

4.

Protein structure databases with new web services for structural biology and biomedical research.

Standley DM, Kinjo AR, Kinoshita K, Nakamura H.

Brief Bioinform. 2008 Jul;9(4):276-85. doi: 10.1093/bib/bbn015. Epub 2008 Apr 22. Review.

5.

Searching the MINT database for protein interaction information.

Cesareni G, Helmer-Citterich M.

Curr Protoc Bioinformatics. 2003 Aug;Chapter 8:Unit 8.5. doi: 10.1002/0471250953.bi0805s02.

PMID:
18428712
6.

Adding some SPICE to DAS.

Prlić A, Down TA, Hubbard TJ.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii40-1.

7.

PROTEIOS: an open source proteomics initiative.

Gärdén P, Alm R, Häkkinen J.

Bioinformatics. 2005 May 1;21(9):2085-7. Epub 2005 Feb 3.

8.

FPV: fast protein visualization using Java 3D.

Can T, Wang Y, Wang YF, Su J.

Bioinformatics. 2003 May 22;19(8):913-22.

9.

MOLVIE: an interactive visualization environment for molecular structures.

Sun H, Li M, Xu Y.

Comput Methods Programs Biomed. 2003 May;71(1):85-90.

PMID:
12725967
10.

PTGL--a web-based database application for protein topologies.

May P, Barthel S, Koch I.

Bioinformatics. 2004 Nov 22;20(17):3277-9. Epub 2004 Jun 24.

11.

Identification of protein functions from a molecular surface database, eF-site.

Kinoshita K, Furui J, Nakamura H.

J Struct Funct Genomics. 2002;2(1):9-22.

PMID:
12836670
12.

Ramachandran plot on the web.

Sheik SS, Sundararajan P, Hussain AS, Sekar K.

Bioinformatics. 2002 Nov;18(11):1548-9.

13.

Protein family annotation in a multiple alignment viewer.

Johnson JM, Mason K, Moallemi C, Xi H, Somaroo S, Huang ES.

Bioinformatics. 2003 Mar 1;19(4):544-5.

14.

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Salwinski L, Eisenberg D.

Bioinformatics. 2007 Aug 15;23(16):2193-5. Epub 2007 Jun 6.

15.

Visualization and analysis of protein interactions.

Ju BH, Park B, Park JH, Han K.

Bioinformatics. 2003 Jan 22;19(2):317-8.

16.

Using the tools and resources of the RCSB protein data bank.

Dutta S, M Berman H, F Bluhm W.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 1:Unit1.9. doi: 10.1002/0471250953.bi0109s20.

PMID:
18428680
17.

CAP: conformation angles package-displaying the conformation angles of side chains in proteins.

Sheik SS, Sundararajan P, Shanthi V, Sekar K.

Bioinformatics. 2003 May 22;19(8):1043-4.

18.

XdomView: protein domain and exon position visualization.

Vivek G, Tan TW, Ranganathan S.

Bioinformatics. 2003 Jan;19(1):159-60.

19.

The SRS 3D module: integrating structures, sequences and features.

O'Donoghue SI, Meyer JE, Schafferhans A, Fries K.

Bioinformatics. 2004 Oct 12;20(15):2476-8. Epub 2004 Apr 15.

20.

Recent developments in the PHENIX software for automated crystallographic structure determination.

Adams PD, Gopal K, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Pai RK, Read RJ, Romo TD, Sacchettini JC, Sauter NK, Storoni LC, Terwilliger TC.

J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):53-5. Epub 2003 Nov 28.

PMID:
14646133
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