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Similar articles for PubMed (Select 14673105)

1.

Genome evolution reveals biochemical networks and functional modules.

von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15428-33. Epub 2003 Dec 12.

2.

Prediction of functional modules based on gene distributions in microbial genomes.

Wu H, Mao F, Su Z, Olman V, Xu Y.

Genome Inform. 2005;16(2):247-59.

PMID:
16901107
3.

A functional update of the Escherichia coli K-12 genome.

Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M.

Genome Biol. 2001;2(9):RESEARCH0035. Epub 2001 Aug 20.

4.

Detecting gene clusters under evolutionary constraint in a large number of genomes.

Ling X, He X, Xin D.

Bioinformatics. 2009 Mar 1;25(5):571-7. doi: 10.1093/bioinformatics/btp027. Epub 2009 Jan 21.

5.

Hierarchical organization of modularity in metabolic networks.

Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL.

Science. 2002 Aug 30;297(5586):1551-5.

7.

Reticulate representation of evolutionary and functional relationships between phage genomes.

Lima-Mendez G, Van Helden J, Toussaint A, Leplae R.

Mol Biol Evol. 2008 Apr;25(4):762-77. doi: 10.1093/molbev/msn023. Epub 2008 Jan 29.

8.

Protein interaction maps for complete genomes based on gene fusion events.

Enright AJ, Iliopoulos I, Kyrpides NC, Ouzounis CA.

Nature. 1999 Nov 4;402(6757):86-90.

PMID:
10573422
9.

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.

Ma HW, Zhao XM, Yuan YJ, Zeng AP.

Bioinformatics. 2004 Aug 12;20(12):1870-6. Epub 2004 Mar 22.

10.

STRING: a database of predicted functional associations between proteins.

von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B.

Nucleic Acids Res. 2003 Jan 1;31(1):258-61.

11.

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

BMC Microbiol. 2007 Jun 8;7:53.

12.

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID:
15823404
13.

Quantifying modularity in the evolution of biomolecular systems.

Snel B, Huynen MA.

Genome Res. 2004 Mar;14(3):391-7.

14.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

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Computational prediction of human metabolic pathways from the complete human genome.

Romero P, Wagg J, Green ML, Kaiser D, Krummenacker M, Karp PD.

Genome Biol. 2005;6(1):R2. Epub 2004 Dec 22.

19.

Environmental versatility promotes modularity in genome-scale metabolic networks.

Samal A, Wagner A, Martin OC.

BMC Syst Biol. 2011 Aug 24;5:135. doi: 10.1186/1752-0509-5-135.

20.
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