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Results: 1 to 20 of 106

1.

A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.

Krause R, von Mering C, Bork P.

Bioinformatics. 2003 Oct 12;19(15):1901-8.

PMID:
14555622
[PubMed - indexed for MEDLINE]
Free Article
2.

Penalized and weighted K-means for clustering with scattered objects and prior information in high-throughput biological data.

Tseng GC.

Bioinformatics. 2007 Sep 1;23(17):2247-55. Epub 2007 Jun 27.

PMID:
17597097
[PubMed - indexed for MEDLINE]
Free Article
3.

A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.

Hart GT, Lee I, Marcotte ER.

BMC Bioinformatics. 2007 Jul 2;8:236.

PMID:
17605818
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Iterative cluster analysis of protein interaction data.

Arnau V, Mars S, MarĂ­n I.

Bioinformatics. 2005 Feb 1;21(3):364-78. Epub 2004 Sep 16.

PMID:
15374873
[PubMed - indexed for MEDLINE]
Free Article
5.

A statistical framework for combining and interpreting proteomic datasets.

Gilchrist MA, Salter LA, Wagner A.

Bioinformatics. 2004 Mar 22;20(5):689-700. Epub 2004 Jan 22.

PMID:
15033876
[PubMed - indexed for MEDLINE]
Free Article
6.

Shared components of protein complexes--versatile building blocks or biochemical artefacts?

Krause R, von Mering C, Bork P, Dandekar T.

Bioessays. 2004 Dec;26(12):1333-43.

PMID:
15551274
[PubMed - indexed for MEDLINE]
7.

Integrative approach for computationally inferring protein domain interactions.

Ng SK, Zhang Z, Tan SH.

Bioinformatics. 2003 May 22;19(8):923-9.

PMID:
12761053
[PubMed - indexed for MEDLINE]
Free Article
8.

GIBA: a clustering tool for detecting protein complexes.

Moschopoulos CN, Pavlopoulos GA, Schneider R, Likothanassis SD, Kossida S.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S11. doi: 10.1186/1471-2105-10-S6-S11.

PMID:
19534736
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Analyzing yeast protein-protein interaction data obtained from different sources.

Bader GD, Hogue CW.

Nat Biotechnol. 2002 Oct;20(10):991-7.

PMID:
12355115
[PubMed - indexed for MEDLINE]
10.

Generating protein interaction maps from incomplete data: application to fold assignment.

Lappe M, Park J, Niggemann O, Holm L.

Bioinformatics. 2001;17 Suppl 1:S149-56.

PMID:
11473004
[PubMed - indexed for MEDLINE]
Free Article
11.

Bootstrapping the interactome: unsupervised identification of protein complexes in yeast.

Friedel CC, Krumsiek J, Zimmer R.

J Comput Biol. 2009 Aug;16(8):971-87. doi: 10.1089/cmb.2009.0023.

PMID:
19630542
[PubMed - indexed for MEDLINE]
12.

Large scale hierarchical clustering of protein sequences.

Krause A, Stoye J, Vingron M.

BMC Bioinformatics. 2005 Jan 22;6:15.

PMID:
15663796
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Statistically rigorous automated protein annotation.

Krebs WG, Bourne PE.

Bioinformatics. 2004 May 1;20(7):1066-73. Epub 2004 Feb 5.

PMID:
14764575
[PubMed - indexed for MEDLINE]
Free Article
14.

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.

Li H, Li J, Wong L.

Bioinformatics. 2006 Apr 15;22(8):989-96. Epub 2006 Jan 29.

PMID:
16446278
[PubMed - indexed for MEDLINE]
Free Article
15.

Global snapshot of a protein interaction network-a percolation based approach.

Chin CS, Samanta MP.

Bioinformatics. 2003 Dec 12;19(18):2413-9.

PMID:
14668225
[PubMed - indexed for MEDLINE]
Free Article
16.

Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces.

Bordner AJ, Gorin AA.

BMC Bioinformatics. 2008 May 12;9:234. doi: 10.1186/1471-2105-9-234.

PMID:
18474114
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Family relationships: should consensus reign?--consensus clustering for protein families.

Nikolski M, Sherman DJ.

Bioinformatics. 2007 Jan 15;23(2):e71-6. Erratum in: Bioinformatics. 2009 Sep 1;25(17):2294.

PMID:
17237108
[PubMed - indexed for MEDLINE]
Free Article
18.

Discovering patterns to extract protein-protein interactions from full texts.

Huang M, Zhu X, Hao Y, Payan DG, Qu K, Li M.

Bioinformatics. 2004 Dec 12;20(18):3604-12. Epub 2004 Jul 29.

PMID:
15284092
[PubMed - indexed for MEDLINE]
Free Article
19.

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.

PMID:
19432377
[PubMed - indexed for MEDLINE]
20.

Inferring strengths of protein-protein interactions from experimental data using linear programming.

Hayashida M, Ueda N, Akutsu T.

Bioinformatics. 2003 Oct;19 Suppl 2:ii58-65.

PMID:
14534173
[PubMed - indexed for MEDLINE]
Free Article

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