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Results: 1 to 20 of 155

1.

InterPro: an integrated documentation resource for protein families, domains and functional sites.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, Gouzy J, Griffith-Jones S, Haft D, Hermjakob H, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Orchard S, Pagni M, Peyruc D, Ponting CP, Servant F, Sigrist CJ; InterPro Consortium.

Brief Bioinform. 2002 Sep;3(3):225-35.

PMID:
12230031
[PubMed - indexed for MEDLINE]
Free Article
2.

InterPro--an integrated documentation resource for protein families, domains and functional sites.

Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium.

Bioinformatics. 2000 Dec;16(12):1145-50.

PMID:
11159333
[PubMed - indexed for MEDLINE]
Free Article
3.

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM.

Nucleic Acids Res. 2001 Jan 1;29(1):37-40.

PMID:
11125043
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The InterPro Database, 2003 brings increased coverage and new features.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.

Nucleic Acids Res. 2003 Jan 1;31(1):315-8.

PMID:
12520011
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.

Biswas M, Kanapin A, Apweiler R.

J Biosci. 2001 Jun;26(2):277-84.

PMID:
11426064
[PubMed - indexed for MEDLINE]
Free Article
6.

InterPro, progress and status in 2005.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D201-5.

PMID:
15608177
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

[InterPro as a new tool for whole genome analysis. A comparative analysis of Mycobacterium tuberculosis, Bacillus subtilis and Escherichia coli as a case study].

Mulder N, Fleischmann W, Kanapin A, Arwailer R.

Biofizika. 2006 Jul-Aug;51(4):656-60. Russian.

PMID:
16909843
[PubMed - indexed for MEDLINE]
8.

InterPro protein classification.

McDowall J, Hunter S.

Methods Mol Biol. 2011;694:37-47. doi: 10.1007/978-1-60761-977-2_3.

PMID:
21082426
[PubMed - indexed for MEDLINE]
9.

New developments in the InterPro database.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8.

PMID:
17202162
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Website review: interPro (the integrated resource of protein domains and functional sites).

Southan C.

Yeast. 2000 Dec;17(4):327-34.

PMID:
11119311
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

InterPro and InterProScan: tools for protein sequence classification and comparison.

Mulder N, Apweiler R.

Methods Mol Biol. 2007;396:59-70.

PMID:
18025686
[PubMed - indexed for MEDLINE]
12.

Applications of InterPro in protein annotation and genome analysis.

Biswas M, O'Rourke JF, Camon E, Fraser G, Kanapin A, Karavidopoulou Y, Kersey P, Kriventseva E, Mittard V, Mulder N, Phan I, Servant F, Apweiler R.

Brief Bioinform. 2002 Sep;3(3):285-95.

PMID:
12230037
[PubMed - indexed for MEDLINE]
Free Article
13.

InterPro: the integrative protein signature database.

Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D211-5. doi: 10.1093/nar/gkn785. Epub 2008 Oct 21.

PMID:
18940856
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

HMM-based databases in InterPro.

Bateman A, Haft DH.

Brief Bioinform. 2002 Sep;3(3):236-45.

PMID:
12230032
[PubMed - indexed for MEDLINE]
Free Article
15.

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.

Kriventseva EV, Fleischmann W, Zdobnov EM, Apweiler R.

Nucleic Acids Res. 2001 Jan 1;29(1):33-6.

PMID:
11125042
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

ProDom: automated clustering of homologous domains.

Servant F, Bru C, Carrère S, Courcelle E, Gouzy J, Peyruc D, Kahn D.

Brief Bioinform. 2002 Sep;3(3):246-51.

PMID:
12230033
[PubMed - indexed for MEDLINE]
Free Article
17.

Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.

Kriventseva EV, Servant F, Apweiler R.

Nucleic Acids Res. 2003 Jan 1;31(1):388-9.

PMID:
12520029
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Review.

PMID:
18219596
[PubMed - indexed for MEDLINE]
19.

The InterPro BioMart: federated query and web service access to the InterPro Resource.

Jones P, Binns D, McMenamin C, McAnulla C, Hunter S.

Database (Oxford). 2011 Jul 23;2011:bar033. doi: 10.1093/database/bar033. Print 2011.

PMID:
21785143
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

PRINTS prepares for the new millennium.

Attwood TK, Flower DR, Lewis AP, Mabey JE, Morgan SR, Scordis P, Selley JN, Wright W.

Nucleic Acids Res. 1999 Jan 1;27(1):220-5.

PMID:
9847185
[PubMed - indexed for MEDLINE]
Free PMC Article

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