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Results: 1 to 20 of 47

1.

The identification of functional modules from the genomic association of genes.

Snel B, Bork P, Huynen MA.

Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5890-5.

PMID:
11983890
[PubMed - indexed for MEDLINE]
Free PMC Article
2.
3.

Prediction of functional modules based on gene distributions in microbial genomes.

Wu H, Mao F, Su Z, Olman V, Xu Y.

Genome Inform. 2005;16(2):247-59.

PMID:
16901107
[PubMed - indexed for MEDLINE]
4.

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

Genome Res. 2001 Mar;11(3):356-72.

PMID:
11230160
[PubMed - indexed for MEDLINE]
Free Article
5.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

PMID:
19081792
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Modular co-evolution of metabolic networks.

Zhao J, Ding GH, Tao L, Yu H, Yu ZH, Luo JH, Cao ZW, Li YX.

BMC Bioinformatics. 2007 Aug 27;8:311.

PMID:
17723146
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

PMID:
11024184
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways.

Hattori M, Okuno Y, Goto S, Kanehisa M.

J Am Chem Soc. 2003 Oct 1;125(39):11853-65.

PMID:
14505407
[PubMed - indexed for MEDLINE]
9.

Genome evolution reveals biochemical networks and functional modules.

von Mering C, Zdobnov EM, Tsoka S, Ciccarelli FD, Pereira-Leal JB, Ouzounis CA, Bork P.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15428-33. Epub 2003 Dec 12.

PMID:
14673105
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB.

Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62.

PMID:
11805330
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Combining functional and topological properties to identify core modules in protein interaction networks.

Lubovac Z, Gamalielsson J, Olsson B.

Proteins. 2006 Sep 1;64(4):948-59.

PMID:
16794996
[PubMed - indexed for MEDLINE]
12.

Fast and accurate method for identifying high-quality protein-interaction modules by clique merging and its application to yeast.

Zhang C, Liu S, Zhou Y.

J Proteome Res. 2006 Apr;5(4):801-7.

PMID:
16602686
[PubMed - indexed for MEDLINE]
13.

Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN, et al.

J Bacteriol. 1997 Nov;179(22):7135-55.

PMID:
9371463
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

PMID:
18319338
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Conserved clusters of functionally related genes in two bacterial genomes.

Tamames J, Casari G, Ouzounis C, Valencia A.

J Mol Evol. 1997 Jan;44(1):66-73.

PMID:
9010137
[PubMed - indexed for MEDLINE]
16.

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID:
9379893
[PubMed - indexed for MEDLINE]
17.

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

PMID:
16351747
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.

Glazko GV, Mushegian AR.

Genome Biol. 2004;5(5):R32. Epub 2004 Apr 27.

PMID:
15128446
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genetic networks for the functional study of genomes.

Pisabarro AG, Pérez G, Lavín JL, Ramírez L.

Brief Funct Genomic Proteomic. 2008 Jul;7(4):249-63. doi: 10.1093/bfgp/eln026. Epub 2008 Jun 25.

PMID:
18579617
[PubMed - indexed for MEDLINE]
Free Article
20.

The connectivity structure, giant strong component and centrality of metabolic networks.

Ma HW, Zeng AP.

Bioinformatics. 2003 Jul 22;19(11):1423-30.

PMID:
12874056
[PubMed - indexed for MEDLINE]
Free Article

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