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Results: 1 to 20 of 144

1.

Genesis: cluster analysis of microarray data.

Sturn A, Quackenbush J, Trajanoski Z.

Bioinformatics. 2002 Jan;18(1):207-8.

PMID:
11836235
[PubMed - indexed for MEDLINE]
Free Article
2.

Detecting clusters of different geometrical shapes in microarray gene expression data.

Kim DW, Lee KH, Lee D.

Bioinformatics. 2005 May 1;21(9):1927-34. Epub 2005 Jan 12.

PMID:
15647300
[PubMed - indexed for MEDLINE]
Free Article
3.

cluML: A markup language for clustering and cluster validity assessment of microarray data.

Bolshakova N, Cunningham P.

Appl Bioinformatics. 2005;4(3):211-3.

PMID:
16231963
[PubMed - indexed for MEDLINE]
4.

INCLUSive: integrated clustering, upstream sequence retrieval and motif sampling.

Thijs G, Moreau Y, De Smet F, Mathys J, Lescot M, Rombauts S, Rouze P, De Moor B, Marchal K.

Bioinformatics. 2002 Feb;18(2):331-2.

PMID:
11847086
[PubMed - indexed for MEDLINE]
Free Article
5.

TM4 microarray software suite.

Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J.

Methods Enzymol. 2006;411:134-93. Review.

PMID:
16939790
[PubMed - indexed for MEDLINE]
6.

Visualizing associations between genome sequences and gene expression data using genome-mean expression profiles.

Chiang DY, Brown PO, Eisen MB.

Bioinformatics. 2001;17 Suppl 1:S49-55.

PMID:
11472992
[PubMed - indexed for MEDLINE]
Free Article
7.

Robust multi-scale clustering of large DNA microarray datasets with the consensus algorithm.

Grotkjaer T, Winther O, Regenberg B, Nielsen J, Hansen LK.

Bioinformatics. 2006 Jan 1;22(1):58-67. Epub 2005 Oct 27.

PMID:
16257984
[PubMed - indexed for MEDLINE]
Free Article
8.

Visualization and evaluation of clusters for exploratory analysis of gene expression data.

Kim JH, Kohane IS, Ohno-Machado L.

J Biomed Inform. 2002 Feb;35(1):25-36.

PMID:
12415724
[PubMed - indexed for MEDLINE]
9.

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

PMID:
15813968
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Chatziioannou A, Moulos P, Kolisis FN.

BMC Bioinformatics. 2009 Oct 27;10:354. doi: 10.1186/1471-2105-10-354.

PMID:
19860866
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Construction, visualisation, and clustering of transcription networks from microarray expression data.

Freeman TC, Goldovsky L, Brosch M, van Dongen S, Mazière P, Grocock RJ, Freilich S, Thornton J, Enright AJ.

PLoS Comput Biol. 2007 Oct;3(10):2032-42.

PMID:
17967053
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of large-scale gene expression data.

Sherlock G.

Curr Opin Immunol. 2000 Apr;12(2):201-5. Review.

PMID:
10712947
[PubMed - indexed for MEDLINE]
13.

An unsupervised hierarchical dynamic self-organizing approach to cancer class discovery and marker gene identification in microarray data.

Hsu AL, Tang SL, Halgamuge SK.

Bioinformatics. 2003 Nov 1;19(16):2131-40.

PMID:
14594719
[PubMed - indexed for MEDLINE]
Free Article
14.

FactorY, a bioinformatic resource for genome-wide promoter analysis.

Guruceaga E, Segura V, Corrales FJ, Rubio A.

Comput Biol Med. 2009 Apr;39(4):385-7. doi: 10.1016/j.compbiomed.2009.01.008. Epub 2009 Mar 9.

PMID:
19272592
[PubMed - indexed for MEDLINE]
15.

Bioinformatics analysis of microarray data.

Zhang Y, Szustakowski J, Schinke M.

Methods Mol Biol. 2009;573:259-84. doi: 10.1007/978-1-60761-247-6_15. Review.

PMID:
19763933
[PubMed - indexed for MEDLINE]
16.

Randomized maps for assessing the reliability of patients clusters in DNA microarray data analyses.

Bertoni A, Valentini G.

Artif Intell Med. 2006 Jun;37(2):85-109. Epub 2006 May 23.

PMID:
16720093
[PubMed - indexed for MEDLINE]
17.

DRAGON View: information visualization for annotated microarray data.

Bouton CM, Pevsner J.

Bioinformatics. 2002 Feb;18(2):323-4.

PMID:
11847082
[PubMed - indexed for MEDLINE]
Free Article
18.

An evolving neural network for the interpretation of gene expression patterns.

Marquez Mdel C, Perez PP, Lagunez-Otero J.

OMICS. 2005 Summer;9(2):209-17.

PMID:
15969651
[PubMed - indexed for MEDLINE]
19.

Application of independent component analysis to microarrays.

Lee SI, Batzoglou S.

Genome Biol. 2003;4(11):R76. Epub 2003 Oct 24.

PMID:
14611662
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

MILVA: an interactive tool for the exploration of multidimensional microarray data.

D'Alimonte D, Lowe D, Nabney IT, Mersinias V, Smith CP.

Bioinformatics. 2005 Nov 15;21(22):4192-3. Epub 2005 Sep 13.

PMID:
16159914
[PubMed - indexed for MEDLINE]
Free Article
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