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Results: 1 to 20 of 77

1.

ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis.

Patriotis PC, Querec TD, Gruver BN, Brown TR, Patriotis C.

Biotechniques. 2001 Oct;31(4):862, 864, 866-8, 870, 872.

PMID:
11680718
[PubMed - indexed for MEDLINE]
2.

Dynamic integration of gene annotation and its application to microarray analysis.

Dai H, Tian B, Zhao WD, Leung A, Smith SR, Wan JS, Yao X.

J Bioinform Comput Biol. 2004 Jan;1(4):627-45.

PMID:
15290757
[PubMed - indexed for MEDLINE]
3.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID:
15807904
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
[PubMed - indexed for MEDLINE]
5.

An evolving neural network for the interpretation of gene expression patterns.

Marquez Mdel C, Perez PP, Lagunez-Otero J.

OMICS. 2005 Summer;9(2):209-17.

PMID:
15969651
[PubMed - indexed for MEDLINE]
6.

Factor analysis of cluster-specific gene expression levels from cDNA microarrays.

Peterson LE.

Comput Methods Programs Biomed. 2002 Nov;69(3):179-88.

PMID:
12204446
[PubMed - indexed for MEDLINE]
7.

Processing and quality control of DNA array hybridization data.

Beissbarth T, Fellenberg K, Brors B, Arribas-Prat R, Boer J, Hauser NC, Scheideler M, Hoheisel JD, Schütz G, Poustka A, Vingron M.

Bioinformatics. 2000 Nov;16(11):1014-22.

PMID:
11159313
[PubMed - indexed for MEDLINE]
Free Article
8.

Software and methods for oligonucleotide and cDNA array data analysis.

Zapala MA, Lockhart DJ, Pankratz DG, Garcia AJ, Barlow C, Lockhart DJ.

Genome Biol. 2002;3(6):SOFTWARE0001. Epub 2002 May 23.

PMID:
12093384
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.

PMID:
14633289
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Multiple-testing strategy for analyzing cDNA array data on gene expression.

Delongchamp RR, Bowyer JF, Chen JJ, Kodell RL.

Biometrics. 2004 Sep;60(3):774-82.

PMID:
15339301
[PubMed - indexed for MEDLINE]
11.

SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data.

Chi B, DeLeeuw RJ, Coe BP, MacAulay C, Lam WL.

BMC Bioinformatics. 2004 Feb 9;5:13.

PMID:
15040819
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A statistical perspective on gene expression data analysis.

Satagopan JM, Panageas KS.

Stat Med. 2003 Feb 15;22(3):481-99. Review.

PMID:
12529876
[PubMed - indexed for MEDLINE]
13.

MicroPreP: a cDNA microarray data pre-processing framework.

van Hijum SA, García de la Nava J, Trelles O, Kok J, Kuipers OP.

Appl Bioinformatics. 2003;2(4):241-4.

PMID:
15130795
[PubMed - indexed for MEDLINE]
14.

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

Genome Biol. 2007;8(5):R81.

PMID:
17501994
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Interpretation, design, and analysis of gene array expression experiments.

Miller RA, Galecki A, Shmookler-Reis RJ.

J Gerontol A Biol Sci Med Sci. 2001 Feb;56(2):B52-7.

PMID:
11213267
[PubMed - indexed for MEDLINE]
16.

Accurate, precise modeling of cell proliferation kinetics from time-lapse imaging and automated image analysis of agar yeast culture arrays.

Shah NA, Laws RJ, Wardman B, Zhao LP, Hartman JL 4th.

BMC Syst Biol. 2007 Jan 8;1:3.

PMID:
17408510
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

PMID:
15705192
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Medina I, Al-Shahrour F, Dopazo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W81-5. Epub 2007 Apr 27.

PMID:
17468499
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Fully automatic quantification of microarray image data.

Jain AN, Tokuyasu TA, Snijders AM, Segraves R, Albertson DG, Pinkel D.

Genome Res. 2002 Feb;12(2):325-32.

PMID:
11827952
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

DANCER: a program for digital anatomical reconstruction of gene expression data.

Kankainen M, Wong G.

Nucleic Acids Res. 2003 Nov 1;31(21):e132.

PMID:
14576332
[PubMed - indexed for MEDLINE]
Free PMC Article

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