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Results: 1 to 20 of 78

1.

MAPS: a microarray project system for gene expression experiment information and data validation.

Bushel PR, Hamadeh H, Bennett L, Sieber S, Martin K, Nuwaysir EF, Johnson K, Reynolds K, Paules RS, Afshari CA.

Bioinformatics. 2001 Jun;17(6):564-5.

PMID:
11395436
[PubMed - indexed for MEDLINE]
Free Article
2.

Microarray databases: standards and ontologies.

Stoeckert CJ Jr, Causton HC, Ball CA.

Nat Genet. 2002 Dec;32 Suppl:469-73. Review.

PMID:
12454640
[PubMed - indexed for MEDLINE]
3.

Importing MAGE-ML format microarray data into BioConductor.

Durinck S, Allemeersch J, Carey VJ, Moreau Y, De Moor B.

Bioinformatics. 2004 Dec 12;20(18):3641-2. Epub 2004 Jul 15.

PMID:
15256416
[PubMed - indexed for MEDLINE]
Free Article
4.

The MGED Ontology: a resource for semantics-based description of microarray experiments.

Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr.

Bioinformatics. 2006 Apr 1;22(7):866-73. Epub 2006 Jan 21.

PMID:
16428806
[PubMed - indexed for MEDLINE]
Free Article
5.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

PMID:
18201381
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The MUSC DNA Microarray Database.

Argraves GL, Barth JL, Argraves WS.

Bioinformatics. 2003 Dec 12;19(18):2473-4.

PMID:
14668234
[PubMed - indexed for MEDLINE]
Free Article
7.

SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis.

Colantuoni C, Henry G, Zeger S, Pevsner J.

Bioinformatics. 2002 Nov;18(11):1540-1.

PMID:
12424128
[PubMed - indexed for MEDLINE]
Free Article
8.

A suite of Perl modules for handling microarray data.

Morris JA, Gayther SA, Jacobs IJ, Jones C.

Bioinformatics. 2008 Apr 15;24(8):1102-3. doi: 10.1093/bioinformatics/btn085. Epub 2008 Mar 18.

PMID:
18353790
[PubMed - indexed for MEDLINE]
Free Article
9.

A method of microarray data storage using array data type.

Tsoi LC, Zheng WJ.

Comput Biol Chem. 2007 Apr;31(2):143-7. Epub 2007 Jan 12.

PMID:
17392028
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A Web-based multi-database system supporting distributed collaborative management and sharing of microarray experiment information.

Burgarella S, Cattaneo D, Masseroli M.

AMIA Annu Symp Proc. 2006:868.

PMID:
17238488
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

EzArray: a web-based highly automated Affymetrix expression array data management and analysis system.

Zhu Y, Zhu Y, Xu W.

BMC Bioinformatics. 2008 Jan 24;9:46. doi: 10.1186/1471-2105-9-46.

PMID:
18218103
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.

Hermida L, Schaad O, Demougin P, Descombes P, Primig M.

BMC Bioinformatics. 2006 Apr 5;7:190.

PMID:
16597336
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

READ: RIKEN Expression Array Database.

Bono H, Kasukawa T, Hayashizaki Y, Okazaki Y.

Nucleic Acids Res. 2002 Jan 1;30(1):211-3.

PMID:
11752296
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

KMD: an open-source port of the ArrayExpress microarray database.

Mainguy JP, Macdonnell G, Bund S, Wild DL.

Appl Bioinformatics. 2004;3(4):257-60.

PMID:
15702957
[PubMed - indexed for MEDLINE]
15.

Data management and analysis for gene expression arrays.

Ermolaeva O, Rastogi M, Pruitt KD, Schuler GD, Bittner ML, Chen Y, Simon R, Meltzer P, Trent JM, Boguski MS.

Nat Genet. 1998 Sep;20(1):19-23.

PMID:
9731524
[PubMed - indexed for MEDLINE]
16.

Security-oriented data grids for microarray expression profiles.

Sinnott R, Bayliss C, Jiang J.

Stud Health Technol Inform. 2007;126:67-76.

PMID:
17476049
[PubMed - indexed for MEDLINE]
17.

Design and implementation of microarray gene expression markup language (MAGE-ML).

Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr, Brazma A.

Genome Biol. 2002 Aug 23;3(9):RESEARCH0046. Epub 2002 Aug 23.

PMID:
12225585
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A literature network of human genes for high-throughput analysis of gene expression.

Jenssen TK, Laegreid A, Komorowski J, Hovig E.

Nat Genet. 2001 May;28(1):21-8.

PMID:
11326270
[PubMed - indexed for MEDLINE]
19.

Comparison of different microarray data analysis programs and description of a database for microarray data management.

Xu L, Maresh GA, Giardina J, Pincus SH.

DNA Cell Biol. 2004 Oct;23(10):643-51.

PMID:
15585122
[PubMed - indexed for MEDLINE]
20.

Automatic construction of gene relation networks using text mining and gene expression data.

Karopka T, Scheel T, Bansemer S, Glass A.

Med Inform Internet Med. 2004 Jun;29(2):169-83.

PMID:
15370996
[PubMed - indexed for MEDLINE]

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