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Items: 1 to 20 of 265


Gene2EST: a BLAST2 server for searching expressed sequence tag (EST) databases with eukaryotic gene-sized queries.

Gemünd C, Ramu C, Altenberg-Greulich B, Gibson TJ.

Nucleic Acids Res. 2001 Mar 15;29(6):1272-7.


e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.

Krüger J, Sczyrba A, Kurtz S, Giegerich R.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W301-4.


JESAM: CORBA software components to create and publish EST alignments and clusters.

Parsons JD, Rodriguez-Tomé P.

Bioinformatics. 2000 Apr;16(4):313-25.


More than 1,000 putative new human signalling proteins revealed by EST data mining.

Schultz J, Doerks T, Ponting CP, Copley RR, Bork P.

Nat Genet. 2000 Jun;25(2):201-4.


BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases.

Bimpikis K, Budd A, Linding R, Gibson TJ.

Nucleic Acids Res. 2003 Jul 1;31(13):3792-4.


ESTMAP: a system for expressed sequence tags mapping on genomic sequences.

Milanesi L, Rogozin IB.

IEEE Trans Nanobioscience. 2003 Jun;2(2):75-8.


Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.


SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.

Krause A, Haas SA, Coward E, Vingron M.

Nucleic Acids Res. 2002 Jan 1;30(1):299-300.


The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species.

Quackenbush J, Cho J, Lee D, Liang F, Holt I, Karamycheva S, Parvizi B, Pertea G, Sultana R, White J.

Nucleic Acids Res. 2001 Jan 1;29(1):159-64.


GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.


A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function.

Abdrakhmanov I, Lodygin D, Geroth P, Arakawa H, Law A, Plachy J, Korn B, Buerstedde JM.

Genome Res. 2000 Dec;10(12):2062-9.


GeneBuilder: interactive in silico prediction of gene structure.

Milanesi L, D'Angelo D, Rogozin IB.

Bioinformatics. 1999 Jul-Aug;15(7-8):612-21.


ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q.

BMC Genomics. 2009 Apr 21;10:174. doi: 10.1186/1471-2164-10-174.


A comparison of expressed sequence tags (ESTs) to human genomic sequences.

Wolfsberg TG, Landsman D.

Nucleic Acids Res. 1997 Apr 15;25(8):1626-32.


PEDB: the Prostate Expression Database.

Hawkins V, Doll D, Bumgarner R, Smith T, Abajian C, Hood L, Nelson PS.

Nucleic Acids Res. 1999 Jan 1;27(1):204-8.


AntiHunter 2.0: increased speed and sensitivity in searching BLAST output for EST antisense transcripts.

Lavorgna G, Triunfo R, Santoni F, Orfanelli U, Noci S, Bulfone A, Zanetti G, Casari G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W665-8.


Gene discovery using the maize genome database ZmDB.

Gai X, Lal S, Xing L, Brendel V, Walbot V.

Nucleic Acids Res. 2000 Jan 1;28(1):94-6.

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