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Results: 1 to 20 of 77

1.

Domain size distributions can predict domain boundaries.

Wheelan SJ, Marchler-Bauer A, Bryant SH.

Bioinformatics. 2000 Jul;16(7):613-8.

PMID:
11038331
[PubMed - indexed for MEDLINE]
Free Article
2.
3.

[Prediction of protein domain boundaries based on statistics of appearance of amino acid residues].

Galzitskaia OV, Dovidchenko NV, Lobanov MIu, Garbuzinskiń≠ SA.

Mol Biol (Mosk). 2006 Jan-Feb;40(1):111-21. Russian.

PMID:
16523698
[PubMed - indexed for MEDLINE]
4.

SnapDRAGON: a method to delineate protein structural domains from sequence data.

George RA, Heringa J.

J Mol Biol. 2002 Feb 22;316(3):839-51.

PMID:
11866536
[PubMed - indexed for MEDLINE]
5.

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Redfern OC, Harrison A, Dallman T, Pearl FM, Orengo CA.

PLoS Comput Biol. 2007 Nov;3(11):e232.

PMID:
18052539
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Fast prediction of protein domain boundaries using conserved local patterns.

Joshi RR, Samant VV.

J Mol Model. 2006 Sep;12(6):943-52. Epub 2006 Apr 29.

PMID:
16649034
[PubMed - indexed for MEDLINE]
7.

Armadillo: domain boundary prediction by amino acid composition.

Dumontier M, Yao R, Feldman HJ, Hogue CW.

J Mol Biol. 2005 Jul 29;350(5):1061-73.

PMID:
15978619
[PubMed - indexed for MEDLINE]
8.

Delineation of modular proteins: domain boundary prediction from sequence information.

Kong L, Ranganathan S.

Brief Bioinform. 2004 Jun;5(2):179-92.

PMID:
15260897
[PubMed - indexed for MEDLINE]
Free Article
9.

Inferring boundary information of discontinuous-domain proteins.

Sikder AR, Zomaya AY.

IEEE Trans Nanobioscience. 2008 Sep;7(3):200-5. doi: 10.1109/TNB.2008.2002283.

PMID:
18779100
[PubMed - indexed for MEDLINE]
10.

OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries.

Wu Y, Dousis AD, Chen M, Li J, Ma J.

J Mol Biol. 2009 Jan 30;385(4):1314-29. doi: 10.1016/j.jmb.2008.10.093. Epub 2008 Nov 10.

PMID:
19026662
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A model for the nucleotide-binding domains of ABC transporters based on the large domain of aspartate aminotransferase.

Hoedemaeker FJ, Davidson AR, Rose DR.

Proteins. 1998 Feb 15;30(3):275-86.

PMID:
9517543
[PubMed - indexed for MEDLINE]
12.

Domain boundary prediction based on profile domain linker propensity index.

Dong Q, Wang X, Lin L, Xu Z.

Comput Biol Chem. 2006 Apr;30(2):127-33. Epub 2006 Mar 13.

PMID:
16531120
[PubMed - indexed for MEDLINE]
13.

Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.

Kim DE, Chivian D, Malmström L, Baker D.

Proteins. 2005;61 Suppl 7:193-200.

PMID:
16187362
[PubMed - indexed for MEDLINE]
14.

Sequence-based prediction of protein domains.

Liu J, Rost B.

Nucleic Acids Res. 2004 Jul 7;32(12):3522-30. Print 2004.

PMID:
15240828
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Protein structural domains: analysis of the 3Dee domains database.

Dengler U, Siddiqui AS, Barton GJ.

Proteins. 2001 Feb 15;42(3):332-44.

PMID:
11151005
[PubMed - indexed for MEDLINE]
16.

Characteristics and prediction of domain linker sequences in multi-domain proteins.

Tanaka T, Kuroda Y, Yokoyama S.

J Struct Funct Genomics. 2003;4(2-3):79-85.

PMID:
14649291
[PubMed - indexed for MEDLINE]
17.

Exhaustive enumeration of protein domain families.

Heger A, Holm L.

J Mol Biol. 2003 May 2;328(3):749-67.

PMID:
12706730
[PubMed - indexed for MEDLINE]
18.

Prediction of protein domain boundaries from sequence alone.

Galzitskaya OV, Melnik BS.

Protein Sci. 2003 Apr;12(4):696-701.

PMID:
12649427
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identifying foldable regions in protein sequence from the hydrophobic signal.

Pang CN, Lin K, Wouters MA, Heringa J, George RA.

Nucleic Acids Res. 2008 Feb;36(2):578-88. Epub 2007 Dec 1.

PMID:
18056079
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Protein structure prediction by threading methods: evaluation of current techniques.

Lemer CM, Rooman MJ, Wodak SJ.

Proteins. 1995 Nov;23(3):337-55.

PMID:
8710827
[PubMed - indexed for MEDLINE]

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