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1.

Genome sequence of Halobacterium species NRC-1.

Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, Lasky SR, Baliga NS, Thorsson V, Sbrogna J, Swartzell S, Weir D, Hall J, Dahl TA, Welti R, Goo YA, Leithauser B, Keller K, Cruz R, Danson MJ, Hough DW, Maddocks DG, Jablonski PE, Krebs MP, Angevine CM, Dale H, Isenbarger TA, Peck RF, Pohlschroder M, Spudich JL, Jung KW, Alam M, Freitas T, Hou S, Daniels CJ, Dennis PP, Omer AD, Ebhardt H, Lowe TM, Liang P, Riley M, Hood L, DasSarma S.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12176-81.

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Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1.

Bonneau R, Baliga NS, Deutsch EW, Shannon P, Hood L.

Genome Biol. 2004;5(8):R52. Epub 2004 Jul 12.

7.

Poorly conserved ORFs in the genome of the archaea Halobacterium sp. NRC-1 correspond to expressed proteins.

Shmuely H, Dinitz E, Dahan I, Eichler J, Fischer D, Shaanan B.

Bioinformatics. 2004 May 22;20(8):1248-53. Epub 2004 Feb 10.

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The information transfer system of halophilic archaea.

Capes MD, Coker JA, Gessler R, Grinblat-Huse V, DasSarma SL, Jacob CG, Kim JM, DasSarma P, DasSarma S.

Plasmid. 2011 Mar;65(2):77-101. doi: 10.1016/j.plasmid.2010.11.005. Epub 2010 Nov 19. Review.

PMID:
21094181
10.

Genomic perspective on the photobiology of Halobacterium species NRC-1, a phototrophic, phototactic, and UV-tolerant haloarchaeon.

Dassarma S, Kennedy SP, Berquist B, Victor Ng W, Baliga NS, Spudich JL, Krebs MP, Eisen JA, Johnson CH, Hood L.

Photosynth Res. 2001;70(1):3-17.

PMID:
16228359
11.

Multiple replication origins of the archaeon Halobacterium species NRC-1.

Zhang R, Zhang CT.

Biochem Biophys Res Commun. 2003 Mar 21;302(4):728-34.

PMID:
12646230
12.

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach.

Baliga NS, Pan M, Goo YA, Yi EC, Goodlett DR, Dimitrov K, Shannon P, Aebersold R, Ng WV, Hood L.

Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):14913-8. Epub 2002 Oct 28.

13.

Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN, et al.

J Bacteriol. 1997 Nov;179(22):7135-55.

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Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.

Goo YA, Yi EC, Baliga NS, Tao WA, Pan M, Aebersold R, Goodlett DR, Hood L, Ng WV.

Mol Cell Proteomics. 2003 Aug;2(8):506-24. Epub 2003 Jul 18.

16.

Multiple replication origins of Halobacterium sp. strain NRC-1: properties of the conserved orc7-dependent oriC1.

Coker JA, DasSarma P, Capes M, Wallace T, McGarrity K, Gessler R, Liu J, Xiang H, Tatusov R, Berquist BR, DasSarma S.

J Bacteriol. 2009 Aug;191(16):5253-61. doi: 10.1128/JB.00210-09. Epub 2009 Jun 5.

17.

Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.

Kapatral V, Anderson I, Ivanova N, Reznik G, Los T, Lykidis A, Bhattacharyya A, Bartman A, Gardner W, Grechkin G, Zhu L, Vasieva O, Chu L, Kogan Y, Chaga O, Goltsman E, Bernal A, Larsen N, D'Souza M, Walunas T, Pusch G, Haselkorn R, Fonstein M, Kyrpides N, Overbeek R.

J Bacteriol. 2002 Apr;184(7):2005-18.

19.

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter.

Gan RR, Yi EC, Chiu Y, Lee H, Kao YC, Wu TH, Aebersold R, Goodlett DR, Ng WV.

Mol Cell Proteomics. 2006 Jun;5(6):987-97. Epub 2006 Feb 23.

20.

Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model.

Wan XF, Bridges SM, Boyle JA.

Extremophiles. 2004 Aug;8(4):291-9. Epub 2004 May 19.

PMID:
15150699
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