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Results: 1 to 20 of 218

1.

SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories.

Aravind L, Makarova KS, Koonin EV.

Nucleic Acids Res. 2000 Sep 15;28(18):3417-32.

PMID:
10982859
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging.

Iyer LM, Makarova KS, Koonin EV, Aravind L.

Nucleic Acids Res. 2004 Oct 5;32(17):5260-79. Print 2004.

PMID:
15466593
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

RusA proteins from the extreme thermophile Aquifex aeolicus and lactococcal phage r1t resolve Holliday junctions.

Sharples GJ, Bolt EL, Lloyd RG.

Mol Microbiol. 2002 Apr;44(2):549-59.

PMID:
11972790
[PubMed - indexed for MEDLINE]
5.
6.

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

Koonin EV, Mushegian AR, Galperin MY, Walker DR.

Mol Microbiol. 1997 Aug;25(4):619-37.

PMID:
9379893
[PubMed - indexed for MEDLINE]
7.

The structure of Escherichia coli RusA endonuclease reveals a new Holliday junction DNA binding fold.

Rafferty JB, Bolt EL, Muranova TA, Sedelnikova SE, Leonard P, Pasquo A, Baker PJ, Rice DW, Sharples GJ, Lloyd RG.

Structure. 2003 Dec;11(12):1557-67.

PMID:
14656440
[PubMed - indexed for MEDLINE]
Free Article
8.

Classification of the caspase-hemoglobinase fold: detection of new families and implications for the origin of the eukaryotic separins.

Aravind L, Koonin EV.

Proteins. 2002 Mar 1;46(4):355-67.

PMID:
11835511
[PubMed - indexed for MEDLINE]
9.

Analysis of conserved basic residues associated with DNA binding (Arg69) and catalysis (Lys76) by the RusA holliday junction resolvase.

Bolt EL, Sharples GJ, Lloyd RG.

J Mol Biol. 2000 Nov 24;304(2):165-76.

PMID:
11080453
[PubMed - indexed for MEDLINE]
10.

The UlaG protein family defines novel structural and functional motifs grafted on an ancient RNase fold.

Fernandez FJ, Garces F, López-Estepa M, Aguilar J, Baldomà L, Coll M, Badia J, Vega MC.

BMC Evol Biol. 2011 Sep 26;11:273. doi: 10.1186/1471-2148-11-273.

PMID:
21943130
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements.

Makarova KS, Wolf YI, van der Oost J, Koonin EV.

Biol Direct. 2009 Aug 25;4:29. doi: 10.1186/1745-6150-4-29.

PMID:
19706170
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A novel immunity system for bacterial nucleic acid degrading toxins and its recruitment in various eukaryotic and DNA viral systems.

Zhang D, Iyer LM, Aravind L.

Nucleic Acids Res. 2011 Jun;39(11):4532-52. doi: 10.1093/nar/gkr036. Epub 2011 Feb 8.

PMID:
21306995
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.

Nucleic Acids Res. 2002 Jan 15;30(2):482-96.

PMID:
11788711
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Holliday junction processing in bacteria: insights from the evolutionary conservation of RuvABC, RecG, and RusA.

Sharples GJ, Ingleston SM, Lloyd RG.

J Bacteriol. 1999 Sep;181(18):5543-50. Review. No abstract available.

PMID:
10482492
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of three aspartic acid residues essential for catalysis by the RusA holliday junction resolvase.

Bolt EL, Sharples GJ, Lloyd RG.

J Mol Biol. 1999 Feb 19;286(2):403-15.

PMID:
9973560
[PubMed - indexed for MEDLINE]
16.

Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82.

Mahdi AA, Sharples GJ, Mandal TN, Lloyd RG.

J Mol Biol. 1996 Apr 5;257(3):561-73.

PMID:
8648624
[PubMed - indexed for MEDLINE]
17.

Conserved domains in DNA repair proteins and evolution of repair systems.

Aravind L, Walker DR, Koonin EV.

Nucleic Acids Res. 1999 Mar 1;27(5):1223-42. Review.

PMID:
9973609
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A phylogenomic study of the MutS family of proteins.

Eisen JA.

Nucleic Acids Res. 1998 Sep 15;26(18):4291-300.

PMID:
9722651
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A conserved nuclease domain in the archaeal Holliday junction resolving enzyme Hjc.

Kvaratskhelia M, Wardleworth BN, Norman DG, White MF.

J Biol Chem. 2000 Aug 18;275(33):25540-6.

PMID:
10940317
[PubMed - indexed for MEDLINE]
Free Article
20.

X-ray structure of T4 endonuclease VII: a DNA junction resolvase with a novel fold and unusual domain-swapped dimer architecture.

Raaijmakers H, Vix O, Törõ I, Golz S, Kemper B, Suck D.

EMBO J. 1999 Mar 15;18(6):1447-58.

PMID:
10075917
[PubMed - indexed for MEDLINE]
Free PMC Article

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