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Results: 1 to 20 of 158

1.

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39.

Yarian CS, Basti MM, Cain RJ, Ansari G, Guenther RH, Sochacka E, Czerwinska G, Malkiewicz A, Agris PF.

Nucleic Acids Res. 1999 Sep 1;27(17):3543-9.

PMID:
10446245
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Modified nucleoside dependent Watson-Crick and wobble codon binding by tRNALysUUU species.

Yarian C, Marszalek M, Sochacka E, Malkiewicz A, Guenther R, Miskiewicz A, Agris PF.

Biochemistry. 2000 Nov 7;39(44):13390-5.

PMID:
11063576
[PubMed - indexed for MEDLINE]
3.

Functional anticodon architecture of human tRNALys3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification, t6A.

Stuart JW, Gdaniec Z, Guenther R, Marszalek M, Sochacka E, Malkiewicz A, Agris PF.

Biochemistry. 2000 Nov 7;39(44):13396-404.

PMID:
11063577
[PubMed - indexed for MEDLINE]
4.

The uridine in "U-turn": contributions to tRNA-ribosomal binding.

Ashraf SS, Ansari G, Guenther R, Sochacka E, Malkiewicz A, Agris PF.

RNA. 1999 Apr;5(4):503-11.

PMID:
10199567
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe).

Stuart JW, Koshlap KM, Guenther R, Agris PF.

J Mol Biol. 2003 Dec 12;334(5):901-18.

PMID:
14643656
[PubMed - indexed for MEDLINE]
6.
7.

Human tRNA(Lys3)(UUU) is pre-structured by natural modifications for cognate and wobble codon binding through keto-enol tautomerism.

Vendeix FA, Murphy FV 4th, Cantara WA, LeszczyƄska G, Gustilo EM, Sproat B, Malkiewicz A, Agris PF.

J Mol Biol. 2012 Mar 2;416(4):467-85. doi: 10.1016/j.jmb.2011.12.048. Epub 2011 Dec 29.

PMID:
22227389
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

E. coli glutamyl-tRNA synthetase is inhibited by anticodon stem-loop domains and a minihelix.

Gustilo EM, Dubois DY, Lapointe J, Agris PF.

RNA Biol. 2007 Jul;4(2):85-92. Epub 2007 Jul 5.

PMID:
17671438
[PubMed - indexed for MEDLINE]
Free Article
9.

Role of modified nucleosides of yeast tRNA(Phe) in ribosomal binding.

Ashraf SS, Guenther RH, Ansari G, Malkiewicz A, Sochacka E, Agris PF.

Cell Biochem Biophys. 2000;33(3):241-52.

PMID:
11325044
[PubMed - indexed for MEDLINE]
10.

Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.

Vendeix FA, Dziergowska A, Gustilo EM, Graham WD, Sproat B, Malkiewicz A, Agris PF.

Biochemistry. 2008 Jun 10;47(23):6117-29. doi: 10.1021/bi702356j. Epub 2008 May 13.

PMID:
18473483
[PubMed - indexed for MEDLINE]
11.

A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.

Koshlap KM, Guenther R, Sochacka E, Malkiewicz A, Agris PF.

Biochemistry. 1999 Jul 6;38(27):8647-56.

PMID:
10393540
[PubMed - indexed for MEDLINE]
12.

Ribosomal binding of modified tRNA anticodons related to thermal stability.

Ashraf SS, Guenther R, Ye W, Lee Y, Malkiewicz A, Agris PF.

Nucleic Acids Symp Ser. 1997;(36):58-60. Review.

PMID:
9478206
[PubMed - indexed for MEDLINE]
13.

Hypermodified nucleosides in the anticodon of tRNALys stabilize a canonical U-turn structure.

Sundaram M, Durant PC, Davis DR.

Biochemistry. 2000 Oct 17;39(41):12575-84.

PMID:
11027137
[PubMed - indexed for MEDLINE]
14.

Anticodon domain methylated nucleosides of yeast tRNA(Phe) are significant recognition determinants in the binding of a phage display selected peptide.

Mucha P, Szyk A, Rekowski P, Weiss PA, Agris PF.

Biochemistry. 2001 Nov 27;40(47):14191-9.

PMID:
11714272
[PubMed - indexed for MEDLINE]
15.

Pseudouridines and pseudouridine synthases of the ribosome.

Ofengand J, Malhotra A, Remme J, Gutgsell NS, Del Campo M, Jean-Charles S, Peil L, Kaya Y.

Cold Spring Harb Symp Quant Biol. 2001;66:147-59. Review.

PMID:
12762017
[PubMed - indexed for MEDLINE]
16.

Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs.

Becker HF, Motorin Y, Sissler M, Florentz C, Grosjean H.

J Mol Biol. 1997 Dec 12;274(4):505-18.

PMID:
9417931
[PubMed - indexed for MEDLINE]
17.

Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.

Durant PC, Bajji AC, Sundaram M, Kumar RK, Davis DR.

Biochemistry. 2005 Jun 7;44(22):8078-89.

PMID:
15924427
[PubMed - indexed for MEDLINE]
18.

The effect of pseudouridine and pH on the structure and dynamics of the anticodon stem-loop of tRNA(Lys,3).

Durant PC, Davis DR.

Nucleic Acids Symp Ser. 1997;(36):56-7. Review.

PMID:
9478205
[PubMed - indexed for MEDLINE]
19.

The structure of the human tRNALys3 anticodon bound to the HIV genome is stabilized by modified nucleosides and adjacent mismatch base pairs.

Bilbille Y, Vendeix FA, Guenther R, Malkiewicz A, Ariza X, Vilarrasa J, Agris PF.

Nucleic Acids Res. 2009 Jun;37(10):3342-53. doi: 10.1093/nar/gkp187. Epub 2009 Mar 26.

PMID:
19324888
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Synthesis of helix 69 of Escherichia coli 23S rRNA containing its natural modified nucleosides, m(3)Psi and Psi.

Chui HM, Desaulniers JP, Scaringe SA, Chow CS.

J Org Chem. 2002 Dec 13;67(25):8847-54.

PMID:
12467398
[PubMed - indexed for MEDLINE]

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