Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 79

1.

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.

Thompson JD, Plewniak F, Poch O.

Bioinformatics. 1999 Jan;15(1):87-8.

PMID:
10068696
[PubMed - indexed for MEDLINE]
Free Article
2.

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.

Bahr A, Thompson JD, Thierry JC, Poch O.

Nucleic Acids Res. 2001 Jan 1;29(1):323-6.

PMID:
11125126
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.

Thompson JD, Koehl P, Ripp R, Poch O.

Proteins. 2005 Oct 1;61(1):127-36.

PMID:
16044462
[PubMed - indexed for MEDLINE]
4.

RASCAL: rapid scanning and correction of multiple sequence alignments.

Thompson JD, Thierry JC, Poch O.

Bioinformatics. 2003 Jun 12;19(9):1155-61.

PMID:
12801878
[PubMed - indexed for MEDLINE]
Free Article
5.

Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set.

Karplus K, Hu B.

Bioinformatics. 2001 Aug;17(8):713-20.

PMID:
11524372
[PubMed - indexed for MEDLINE]
Free Article
6.

GOAnno: GO annotation based on multiple alignment.

Chalmel F, Lardenois A, Thompson JD, Muller J, Sahel JA, LĂ©veillard T, Poch O.

Bioinformatics. 2005 May 1;21(9):2095-6. Epub 2005 Jan 12.

PMID:
15647299
[PubMed - indexed for MEDLINE]
Free Article
7.

A comprehensive comparison of multiple sequence alignment programs.

Thompson JD, Plewniak F, Poch O.

Nucleic Acids Res. 1999 Jul 1;27(13):2682-90.

PMID:
10373585
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.

Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.

BMC Bioinformatics. 2003 Oct 10;4:47.

PMID:
14552658
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Multiple sequence alignment using an exhaustive and greedy algorithm.

Wang Y, Li KB.

J Bioinform Comput Biol. 2005 Apr;3(2):243-55.

PMID:
15852503
[PubMed - indexed for MEDLINE]
10.

DbW: automatic update of a functional family-specific multiple alignment.

Prigent V, Thierry JC, Poch O, Plewniak F.

Bioinformatics. 2005 Apr 15;21(8):1437-42. Epub 2004 Dec 14.

PMID:
15598832
[PubMed - indexed for MEDLINE]
Free Article
11.

Probalign: multiple sequence alignment using partition function posterior probabilities.

Roshan U, Livesay DR.

Bioinformatics. 2006 Nov 15;22(22):2715-21. Epub 2006 Sep 5.

PMID:
16954142
[PubMed - indexed for MEDLINE]
Free Article
12.

ProbCons: Probabilistic consistency-based multiple sequence alignment.

Do CB, Mahabhashyam MS, Brudno M, Batzoglou S.

Genome Res. 2005 Feb;15(2):330-40.

PMID:
15687296
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Quality measures for protein alignment benchmarks.

Edgar RC.

Nucleic Acids Res. 2010 Apr;38(7):2145-53. doi: 10.1093/nar/gkp1196. Epub 2010 Jan 4.

PMID:
20047958
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Multiple sequence alignment based on profile alignment of intermediate sequences.

Lu Y, Sze SH.

J Comput Biol. 2008 Sep;15(7):767-77. doi: 10.1089/cmb.2007.0132.

PMID:
18662101
[PubMed - indexed for MEDLINE]
15.

An adaptive and iterative algorithm for refining multiple sequence alignment.

Wang Y, Li KB.

Comput Biol Chem. 2004 Apr;28(2):141-8.

PMID:
15130542
[PubMed - indexed for MEDLINE]
16.

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.

O'Sullivan O, Zehnder M, Higgins D, Bucher P, Grosdidier A, Notredame C.

Bioinformatics. 2003;19 Suppl 1:i215-21.

PMID:
12855461
[PubMed - indexed for MEDLINE]
Free Article
17.

The accuracy of several multiple sequence alignment programs for proteins.

Nuin PA, Wang Z, Tillier ER.

BMC Bioinformatics. 2006 Oct 24;7:471.

PMID:
17062146
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud.

Di Tommaso P, Orobitg M, Guirado F, Cores F, Espinosa T, Notredame C.

Bioinformatics. 2010 Aug 1;26(15):1903-4. doi: 10.1093/bioinformatics/btq304. Epub 2010 Jul 6.

PMID:
20605929
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Assessing the efficiency of multiple sequence alignment programs.

Pais FS, Ruy Pde C, Oliveira G, Coimbra RS.

Algorithms Mol Biol. 2014 Mar 6;9(1):4. doi: 10.1186/1748-7188-9-4.

PMID:
24602402
[PubMed]
Free PMC Article
20.

A tabu search algorithm for post-processing multiple sequence alignment.

Riaz T, Yi W, Li KB.

J Bioinform Comput Biol. 2005 Feb;3(1):145-56.

PMID:
15751117
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk