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Results: 1 to 20 of 52

PubMed (Weighted) Links for Nucleotide (Select 9627425)

1.

[Antirestriction activity of T7 Ocr protein in monomeric and dimeric forms].

Zavil'gelskiĭ GB, Kotova VIu.

Mol Biol (Mosk). 2014 Jan-Feb;48(1):176-84. Russian.

PMID:
25842838
2.

Zinc-binding domain of the bacteriophage T7 DNA primase modulates binding to the DNA template.

Lee SJ, Zhu B, Akabayov B, Richardson CC.

J Biol Chem. 2012 Nov 9;287(46):39030-40. doi: 10.1074/jbc.M112.414151. Epub 2012 Sep 28.

3.

An interaction between DNA polymerase and helicase is essential for the high processivity of the bacteriophage T7 replisome.

Kulczyk AW, Akabayov B, Lee SJ, Bostina M, Berkowitz SA, Richardson CC.

J Biol Chem. 2012 Nov 9;287(46):39050-60. doi: 10.1074/jbc.M112.410647. Epub 2012 Sep 12.

4.

Substitutions in the Escherichia coli RNA polymerase inhibitor T7 Gp2 that allow inhibition of transcription when the primary interaction interface between Gp2 and RNA polymerase becomes compromised.

Shadrin A, Sheppard C, Severinov K, Matthews S, Wigneshweraraj S.

Microbiology. 2012 Nov;158(Pt 11):2753-64. doi: 10.1099/mic.0.062547-0. Epub 2012 Sep 13.

5.

Structural and mechanistic basis for the inhibition of Escherichia coli RNA polymerase by T7 Gp2.

James E, Liu M, Sheppard C, Mekler V, Cámara B, Liu B, Simpson P, Cota E, Severinov K, Matthews S, Wigneshweraraj S.

Mol Cell. 2012 Sep 14;47(5):755-66. doi: 10.1016/j.molcel.2012.06.013. Epub 2012 Jul 19.

6.

The roles of tryptophans in primer synthesis by the DNA primase of bacteriophage T7.

Zhang H, Lee SJ, Richardson CC.

J Biol Chem. 2012 Jul 6;287(28):23644-56. doi: 10.1074/jbc.M112.366096. Epub 2012 May 17.

7.

Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication.

Zhu B, Lee SJ, Tan M, Wang ED, Richardson CC.

Proc Natl Acad Sci U S A. 2012 May 22;109(21):8050-5. doi: 10.1073/pnas.1205990109. Epub 2012 May 7.

8.

T7 RNA polymerases backed up by covalently trapped proteins catalyze highly error prone transcription.

Nakano T, Ouchi R, Kawazoe J, Pack SP, Makino K, Ide H.

J Biol Chem. 2012 Feb 24;287(9):6562-72. doi: 10.1074/jbc.M111.318410. Epub 2012 Jan 10.

9.

Importance of steric effects on the efficiency and fidelity of transcription by T7 RNA polymerase.

Ulrich S, Kool ET.

Biochemistry. 2011 Nov 29;50(47):10343-9. doi: 10.1021/bi2011465. Epub 2011 Nov 1.

10.

The 5.5 protein of phage T7 inhibits H-NS through interactions with the central oligomerization domain.

Ali SS, Beckett E, Bae SJ, Navarre WW.

J Bacteriol. 2011 Sep;193(18):4881-92. doi: 10.1128/JB.05198-11. Epub 2011 Jul 15.

11.

Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis.

Zhang H, Lee SJ, Zhu B, Tran NQ, Tabor S, Richardson CC.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9372-7. doi: 10.1073/pnas.1106678108. Epub 2011 May 23.

12.

Conformational dynamics of bacteriophage T7 DNA polymerase and its processivity factor, Escherichia coli thioredoxin.

Akabayov B, Akabayov SR, Lee SJ, Tabor S, Kulczyk AW, Richardson CC.

Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15033-8. doi: 10.1073/pnas.1010141107. Epub 2010 Aug 9.

13.

Two modes of interaction of the single-stranded DNA-binding protein of bacteriophage T7 with the DNA polymerase-thioredoxin complex.

Ghosh S, Hamdan SM, Richardson CC.

J Biol Chem. 2010 Jun 4;285(23):18103-12. doi: 10.1074/jbc.M110.107656. Epub 2010 Apr 6.

14.

T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site.

Cámara B, Liu M, Reynolds J, Shadrin A, Liu B, Kwok K, Simpson P, Weinzierl R, Severinov K, Cota E, Matthews S, Wigneshweraraj SR.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2247-52. doi: 10.1073/pnas.0907908107. Epub 2010 Jan 19.

15.

Thioredoxin suppresses microscopic hopping of T7 DNA polymerase on duplex DNA.

Etson CM, Hamdan SM, Richardson CC, van Oijen AM.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1900-5. doi: 10.1073/pnas.0912664107. Epub 2010 Jan 11.

16.

An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities.

Zhu B, Lee SJ, Richardson CC.

J Biol Chem. 2009 Aug 28;284(35):23842-51. doi: 10.1074/jbc.M109.026104. Epub 2009 Jul 1.

17.

Rescue of bacteriophage T7 DNA polymerase of low processivity by suppressor mutations affecting gene 3 endonuclease.

Lee SJ, Chowdhury K, Tabor S, Richardson CC.

J Virol. 2009 Sep;83(17):8418-27. doi: 10.1128/JVI.00855-09. Epub 2009 Jun 17.

18.

Polymerase-tailored variations in the water-mediated and substrate-assisted mechanism for nucleotidyl transfer: insights from a study of T7 DNA polymerase.

Wang L, Broyde S, Zhang Y.

J Mol Biol. 2009 Jun 19;389(4):787-96. doi: 10.1016/j.jmb.2009.04.029. Epub 2009 Apr 21.

19.

DNA recognition by the DNA primase of bacteriophage T7: a structure-function study of the zinc-binding domain.

Akabayov B, Lee SJ, Akabayov SR, Rekhi S, Zhu B, Richardson CC.

Biochemistry. 2009 Mar 3;48(8):1763-73. doi: 10.1021/bi802123t.

20.

The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation.

Durniak KJ, Bailey S, Steitz TA.

Science. 2008 Oct 24;322(5901):553-7. doi: 10.1126/science.1163433.

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