A pyrimidine-rich exonic splicing suppressor binds multiple RNA splicing factors and inhibits spliceosome assembly

Proc Natl Acad Sci U S A. 1998 Nov 24;95(24):14088-93. doi: 10.1073/pnas.95.24.14088.

Abstract

The bovine papillomavirus type 1 (BPV-1) exonic splicing suppressor (ESS) is juxtaposed immediately downstream of BPV-1 splicing enhancer 1 and negatively modulates selection of a suboptimal 3' splice site at nucleotide 3225. The present study demonstrates that this pyrimidine-rich ESS inhibits utilization of upstream 3' splice sites by blocking early steps in spliceosome assembly. Analysis of the proteins that bind to the ESS showed that the U-rich 5' region binds U2AF65 and polypyrimidine tract binding protein, the C-rich central part binds 35- and 54-55-kDa serine/arginine-rich (SR) proteins, and the AG-rich 3' end binds alternative splicing factor/splicing factor 2. Mutational and functional studies indicated that the most critical region of the ESS maps to the central C-rich core (GGCUCCCCC). This core sequence, along with additional nonspecific downstream nucleotides, is sufficient for partial suppression of spliceosome assembly and splicing of BPV-1 pre-mRNAs. The inhibition of splicing by the ESS can be partially relieved by excess purified HeLa SR proteins, suggesting that the ESS suppresses pre-mRNA splicing by interfering with normal bridging and recruitment activities of SR proteins.

MeSH terms

  • Alternative Splicing*
  • Animals
  • Base Sequence
  • Bovine papillomavirus 1 / genetics*
  • Bovine papillomavirus 1 / metabolism
  • Cattle
  • Enhancer Elements, Genetic
  • Exons*
  • HIV-1 / genetics
  • HeLa Cells
  • Humans
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Nuclear Proteins / metabolism
  • Nucleic Acid Conformation
  • Polymerase Chain Reaction
  • RNA Precursors / chemistry
  • RNA Precursors / genetics
  • RNA, Viral / chemistry
  • RNA, Viral / genetics
  • RNA-Binding Proteins
  • Sequence Deletion
  • Serine-Arginine Splicing Factors
  • Spliceosomes / genetics
  • Spliceosomes / metabolism
  • Templates, Genetic
  • Transcription, Genetic

Substances

  • Nuclear Proteins
  • RNA Precursors
  • RNA, Viral
  • RNA-Binding Proteins
  • Serine-Arginine Splicing Factors