Challenging immunodominance of influenza-specific CD8+ T cell responses restricted by the risk-associated HLA-A*68:01 allomorph

Nat Commun. 2019 Dec 6;10(1):5579. doi: 10.1038/s41467-019-13346-4.

Abstract

Although influenza viruses lead to severe illness in high-risk populations, host genetic factors associated with severe disease are largely unknown. As the HLA-A*68:01 allele can be linked to severe pandemic 2009-H1N1 disease, we investigate a potential impairment of HLA-A*68:01-restricted CD8+ T cells to mount robust responses. We elucidate the HLA-A*68:01+CD8+ T cell response directed toward an extended influenza-derived nucleoprotein (NP) peptide and show that only ~35% individuals have immunodominant A68/NP145+CD8+ T cell responses. Dissecting A68/NP145+CD8+ T cells in low vs. medium/high responders reveals that high responding donors have A68/NP145+CD8+ memory T cells with clonally expanded TCRαβs, while low-responders display A68/NP145+CD8+ T cells with predominantly naïve phenotypes and non-expanded TCRαβs. Single-cell index sorting and TCRαβ analyses link expansion of A68/NP145+CD8+ T cells to their memory potential. Our study demonstrates the immunodominance potential of influenza-specific CD8+ T cells presented by a risk HLA-A*68:01 molecule and advocates for priming CD8+ T cell compartments in HLA-A*68:01-expressing individuals for establishment of pre-existing protective memory T cell pools.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigen Presentation
  • Antigens, Viral / chemistry
  • CD8-Positive T-Lymphocytes / immunology*
  • Cell Line
  • Cross Protection
  • Cross Reactions / immunology
  • Epitopes, T-Lymphocyte / immunology
  • HLA-A Antigens / chemistry
  • HLA-A Antigens / genetics
  • HLA-A Antigens / immunology*
  • HLA-A Antigens / metabolism*
  • Humans
  • Immunologic Memory / immunology
  • Influenza A Virus, H1N1 Subtype / immunology
  • Influenza A virus / immunology*
  • Influenza, Human / immunology*
  • Models, Molecular
  • Nucleoproteins / chemistry
  • Orthomyxoviridae / genetics
  • Orthomyxoviridae / immunology
  • Peptide Fragments / chemistry
  • Phenotype
  • Protein Conformation
  • Receptors, Antigen, T-Cell, alpha-beta / metabolism
  • Viral Core Proteins / genetics

Substances

  • Antigens, Viral
  • Epitopes, T-Lymphocyte
  • HLA-A Antigens
  • HLA-A*68 antigen
  • Nucleoproteins
  • Peptide Fragments
  • Receptors, Antigen, T-Cell, alpha-beta
  • Viral Core Proteins