Binding of carboxylate and trimethylammonium salts to octa-acid and TEMOA deep-cavity cavitands

J Comput Aided Mol Des. 2017 Jan;31(1):21-28. doi: 10.1007/s10822-016-9925-0. Epub 2016 Jul 18.

Abstract

In participation of the fifth statistical assessment of modeling of proteins and ligands (SAMPL5), the strength of association of six guests (3-8) to two hosts (1 and 2) were measured by 1H NMR and ITC. Each host possessed a unique and well-defined binding pocket, whilst the wide array of amphiphilic guests possessed binding moieties that included: a terminal alkyne, nitro-arene, alkyl halide and cyano-arene groups. Solubilizing head groups for the guests included both positively charged trimethylammonium and negatively charged carboxylate functionality. Measured association constants (K a ) covered five orders of magnitude, ranging from 56 M-1 for guest 6 binding with host 2 up to 7.43 × 106 M-1 for guest 6 binding to host 1.

Keywords: Cavitand; Host-guest chemistry; Hydrophobic effect.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Carboxylic Acids / chemistry*
  • Drug Design
  • Ligands
  • Macrocyclic Compounds / chemistry*
  • Molecular Structure
  • Protein Binding
  • Proteins / chemistry*
  • Structure-Activity Relationship
  • Thermodynamics
  • Trimethyl Ammonium Compounds / chemistry*

Substances

  • Carboxylic Acids
  • Ligands
  • Macrocyclic Compounds
  • Proteins
  • Trimethyl Ammonium Compounds