A survey of the parallel performance and accuracy of Poisson solvers for electronic structure calculations

J Comput Chem. 2014 Mar 5;35(6):427-44. doi: 10.1002/jcc.23487. Epub 2013 Nov 19.

Abstract

We present an analysis of different methods to calculate the classical electrostatic Hartree potential created by charge distributions. Our goal is to provide the reader with an estimation on the performance-in terms of both numerical complexity and accuracy-of popular Poisson solvers, and to give an intuitive idea on the way these solvers operate. Highly parallelizable routines have been implemented in a first-principle simulation code (Octopus) to be used in our tests, so that reliable conclusions about the capability of methods to tackle large systems in cluster computing can be obtained from our work.

Keywords: Hartree potential; Poisson solver; charge density; conjugate gradients; fast multipole method; interpolating scaling functions; linear scaling; multigrid; parallel fast Fourier transform; parallelization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms*
  • Chemistry / methods*
  • Computer Simulation
  • Poisson Distribution*
  • Quantum Theory*