Transition state analogue structures of human phosphoglycerate kinase establish the importance of charge balance in catalysis

J Am Chem Soc. 2010 May 12;132(18):6507-16. doi: 10.1021/ja100974t.

Abstract

Transition state analogue (TSA) complexes formed by phosphoglycerate kinase (PGK) have been used to test the hypothesis that balancing of charge within the transition state dominates enzyme-catalyzed phosphoryl transfer. High-resolution structures of trifluoromagnesate (MgF(3)(-)) and tetrafluoroaluminate (AlF(4)(-)) complexes of PGK have been determined using X-ray crystallography and (19)F-based NMR methods, revealing the nature of the catalytically relevant state of this archetypal metabolic kinase. Importantly, the side chain of K219, which coordinates the alpha-phosphate group in previous ground state structures, is sequestered into coordinating the metal fluoride, thereby creating a charge environment complementary to the transferring phosphoryl group. In line with the dominance of charge balance in transition state organization, the substitution K219A induces a corresponding reduction in charge in the bound aluminum fluoride species, which changes to a trifluoroaluminate (AlF(3)(0)) complex. The AlF(3)(0) moiety retains the octahedral geometry observed within AlF(4)(-) TSA complexes, which endorses the proposal that some of the widely reported trigonal AlF(3)(0) complexes of phosphoryl transfer enzymes may have been misassigned and in reality contain MgF(3)(-).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Diphosphate / chemistry
  • Adenosine Diphosphate / metabolism
  • Aluminum Compounds / chemistry
  • Aluminum Compounds / metabolism
  • Biocatalysis*
  • Biophysical Phenomena
  • Electrons*
  • Fluorides / chemistry
  • Fluorides / metabolism
  • Glyceric Acids / chemistry
  • Glyceric Acids / metabolism
  • Humans
  • Isoenzymes / chemistry
  • Isoenzymes / genetics
  • Isoenzymes / metabolism
  • Magnesium / chemistry
  • Magnesium / metabolism
  • Models, Molecular
  • Phosphoglycerate Kinase / chemistry*
  • Phosphoglycerate Kinase / genetics
  • Phosphoglycerate Kinase / metabolism*
  • Point Mutation
  • Protein Structure, Tertiary

Substances

  • Aluminum Compounds
  • Glyceric Acids
  • Isoenzymes
  • tetrafluoroaluminate
  • Adenosine Diphosphate
  • 3-phosphoglycerate
  • Phosphoglycerate Kinase
  • Magnesium
  • Fluorides