Distinct functions of the ubiquitin-proteasome pathway influence nucleotide excision repair

EMBO J. 2006 Jun 7;25(11):2529-38. doi: 10.1038/sj.emboj.7601120.

Abstract

The Rad23/Rad4 nucleotide excision repair (NER) protein complex functions at an early stage of the NER reaction, possibly promoting the recognition of damaged DNA. Here we show that Rad4 protein is ubiquitinated and degraded in response to ultraviolet (UV) radiation, and identify a novel cullin-based E3 ubiquitin ligase required for this process. We also show that this novel ubiquitin ligase is required for optimal NER. Our results demonstrate that optimal NER correlates with the ubiquitination of Rad4 following UV radiation, but not its subsequent degradation. Furthermore, we show that the ubiquitin-proteasome pathway (UPP) regulates NER via two distinct mechanisms. The first occurs independently of de novo protein synthesis, and requires Rad23 and a nonproteolytic function of the 19S regulatory complex of the 26S proteasome. The second requires de novo protein synthesis, and relies on the activity of the newly identified E3 ubiquitin ligase. These studies reveal that, following UV radiation, NER is mediated by nonproteolytic activities of the UPP, via the ubiquitin-like domain of Rad23 and UV radiation-induced ubiquitination of Rad4.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Repair / radiation effects*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Proteasome Endopeptidase Complex / metabolism*
  • Protein Subunits / genetics
  • Protein Subunits / metabolism
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae / radiation effects
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Suppressor of Cytokine Signaling Proteins / metabolism
  • Ubiquitin / metabolism*
  • Ubiquitin-Protein Ligases / metabolism
  • Ultraviolet Rays

Substances

  • DNA-Binding Proteins
  • Protein Subunits
  • RAD23 protein, S cerevisiae
  • RAD7 protein, S cerevisiae
  • Rad4 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Suppressor of Cytokine Signaling Proteins
  • Ubiquitin
  • Ubiquitin-Protein Ligases
  • Proteasome Endopeptidase Complex