The northeastern USA receives some of the highest levels of atmospheric mercury deposition of any region in North America. Moreover, fish from many lakes in this region carry Hg burdens that present health risks to both human and wildlife consumers. The overarching goal of this study was to identify the attributes of lakes in this region that are most likely associated with high Hg burdens in fish. To accomplish this, we compared data collected in four separate multi-lake studies. Correlations among Hg in fish (4 studies) or in zooplankton and fish (2 studies) and numerous chemical, physical, land use, and ecological variables were compared across more than 150 lakes. The analysis produced three general findings. First, the most important predictors of Hg burdens in fish were similar among datasets. As found in past studies, key chemical covariates (e.g., pH, acid neutralizing capacity, and SO4) were negatively correlated with Hg bioaccumulation in the biota. However, negative correlations with several parameters that have not been previously identified (e.g., human land use variables and zooplankton density) were also found to be equally important predictors. Second, certain predictors were unique to individual datasets and differences in lake population characteristics, sampling protocols, and fish species in each study likely explained some of the contrasting results that we found in the analyses. Third, lakes with high rates of Hg bioaccumulation and trophic transfer have low pH and low productivity with relatively undisturbed watersheds suggesting that atmospheric deposition of Hg is the dominant or sole source of input. This study highlights several fundamental complexities when comparing datasets over different environmental conditions but also underscores the utility of such comparisons for revealing key drivers of Hg trophic transfer among different types of lakes.