Water molecules in the binding cavity of intestinal fatty acid binding protein: dynamic characterization by water 17O and 2H magnetic relaxation dispersion

J Mol Biol. 1999 Feb 12;286(1):233-46. doi: 10.1006/jmbi.1998.2490.

Abstract

The hydration of intestinal fatty acid binding protein (IFABP) in apo-form and complexed with palmitate, oleate, and 1-anilino-8-naphthalene sulfonate (ANS) has been studied by water 17O and 2H magnetic relaxation dispersion (MRD) measurements. These ligands bind in a large internal cavity, displacing most of the crystallographically identified cavity water molecules. Unlike most other proteins, IFABP gives rise to MRD profiles with two dispersion steps. The low-frequency dispersion yields a correlation time of 7 ns at 300 K, matching the known tumbling time of IFABP. The dispersion amplitude requires only three (apo) or four (holo) long-lived and ordered water molecules (residence time 0.01-4 microseconds at 300 K). Comparison of MRD profiles from the different complexes indicates that the displaced cavity water molecules are short-lived. The few long-lived (>10 ns) water molecules required by the MRD data are tentatively assigned to crystallographic hydration sites on the basis of accessibility, positional order, and H-bonding. The amplitude of the high-frequency dispersion corresponds to 10-20 moderately ordered water molecules, with a correlation time of ca. 1 ns that may reflect a transient opening of the cavity required for exchange with external water.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Carrier Proteins / chemistry*
  • Crystallography, X-Ray
  • Fatty Acid-Binding Proteins
  • Intestines / chemistry
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Myelin P2 Protein / chemistry*
  • Neoplasm Proteins*
  • Protein Conformation
  • Recombinant Fusion Proteins / chemistry
  • Temperature
  • Water / chemistry*

Substances

  • Carrier Proteins
  • Fatty Acid-Binding Proteins
  • Myelin P2 Protein
  • Neoplasm Proteins
  • Recombinant Fusion Proteins
  • Water