Nucleic Acids Res. 1999 Jan 1;27(1):138-42.

HvrBase: compilation of mtDNA control region sequences from primates.

Source

Max-Planck-Institut für evolutionäre Anthropologie, Inselstrasse 22-26, D-04103 Leipzig, Germany.

Abstract

HvrBase is a compilation of human and ape mtDNA control region sequences. Sequences and related information on individuals, such as from where the sequences were obtained, is stored in three ASCII files as described previously. Moreover, the collection is also available as Mac/PC database application with a graphical user interface. It can be accessed through the WWW at URL http://www.eva.mpg.de/hvrbase. The current collection comprises 5846 human sequences from hypervariable region I (HVRI) and 2302 human sequences from hypervariable region II (HVRII). From apes, 295 HVRI sequences and 13 HVRII sequences are available.

PMID:: 9847159; [PubMed - indexed for MEDLINE]
PMCID:: PMC148114

Free PMC Article

Publication Types, MeSH Terms, Substances

Publication Types

Research Support, Non-U.S. Gov't

MeSH Terms

Substances

DNA, Mitochondrial

LinkOut - more resources

Full Text Sources

Medical

mitochondrial DNA - Genetics Home Reference

Supplemental Content

Save items

Related citations in PubMed

Compilation of human mtDNA control region sequences. [Nucleic Acids Res. 1998]
Compilation of human mtDNA control region sequences.
Handt O, Meyer S, von Haeseler A. Nucleic Acids Res. 1998 Jan 1; 26(1):126-9.
HvrBase++: a phylogenetic database for primate species. [Nucleic Acids Res. 2006]
HvrBase++: a phylogenetic database for primate species.
Kohl J, Paulsen I, Laubach T, Radtke A, von Haeseler A. Nucleic Acids Res. 2006 Jan 1; 34(Database issue):D700-4.
Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences. [Nucleic Acids Res. 1999]
Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences.
Carone A, Malladi SB, Attimonelli M, Saccone C. Nucleic Acids Res. 1999 Jan 1; 27(1):150-2.
Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA. [Genetics. 1999]
Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA.
Meyer S, Weiss G, von Haeseler A. Genetics. 1999 Jul; 152(3):1103-10.
Review The role of molecular biology in human evolutionary studies: current status and future prospects. [Mol Genet Med. 1991]
Review The role of molecular biology in human evolutionary studies: current status and future prospects.
Wills C. Mol Genet Med. 1991; 1:169-232.

See reviews... See all...

Cited by 5 PubMed Central articles

Mitochondrial echoes of first settlement and genetic continuity in El Salvador. [PLoS One. 2009]
Mitochondrial echoes of first settlement and genetic continuity in El Salvador.
Salas A, Lovo-Gómez J, Alvarez-Iglesias V, Cerezo M, Lareu MV, Macaulay V, Richards MB, Carracedo A. PLoS One. 2009 Sep 2; 4(9):e6882. Epub 2009 Sep 2.
HvrBase++: a phylogenetic database for primate species. [Nucleic Acids Res. 2006]
HvrBase++: a phylogenetic database for primate species.
Kohl J, Paulsen I, Laubach T, Radtke A, von Haeseler A. Nucleic Acids Res. 2006 Jan 1; 34(Database issue):D700-4.
A molecular analysis of dietary diversity for three archaic Native Americans. [Proc Natl Acad Sci U S A. 2001]
A molecular analysis of dietary diversity for three archaic Native Americans.
Poinar HN, Kuch M, Sobolik KD, Barnes I, Stankiewicz AB, Kuder T, Spaulding WG, Bryant VM, Cooper A, Pääbo S. Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8):4317-22.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Free in PMC
Free full text articles in PMC
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

HvrBase: compilation of mtDNA control region sequences from primates.
HvrBase: compilation of mtDNA control region sequences from primates.
Nucleic Acids Res. 1999 Jan 1 ;27(1):138-42.

PubMed
Partition and absorption of valatile fatty acids in the alimentary canal of the ...
Partition and absorption of valatile fatty acids in the alimentary canal of the rat.
Ann Rech Vet. 1976 ;7(1):39-55.

PubMed
Predicting gene regulatory elements in silico on a genomic scale.
Predicting gene regulatory elements in silico on a genomic scale.
Genome Res. 1998 Nov ;8(11):1202-15.

PubMed
A minor groove RNA triple helix within the catalytic core of a group I intron.
A minor groove RNA triple helix within the catalytic core of a group I intron.
Nat Struct Biol. 1998 Dec ;5(12):1037-42.

PubMed
Age-related osteoporosis in Chinese: an evaluation of the response of intestinal...
Age-related osteoporosis in Chinese: an evaluation of the response of intestinal calcium absorption and calcitropic hormones to dietary calcium deprivation.
Am J Clin Nutr. 1998 Dec ;68(6):1291-7.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to: