Cdc5p is detected in late G1; S- and M-phase synchronized cells, but Cdc5p-associated kinase activity is restricted to cells arrested in M Phase. Wild-type and cdc mutant cells were arrested in specific stages of the cell cycle using either chemicals or by growth at the restrictive temperature of 37°C, respectively. The cells were synchronized at the various stages as follows: late G1, with α-factor (YCH301) and cdc4-1 (YCH303); G1/S, cells were initially blocked in G1 with α-factor (YCH199) and then released into fresh medium containing HU; S phase, with HU (YCH301); metaphase (Meta), with cdc13-1 (YCH309), nocodazole (NZ) (YCH301), and cdc23-1 (YCH305); and telophase (Tel.), with cdc15-2 (YCH307) and cdc5-1 (YCH214). Extracts from asynchronous (Async) cells were derived from cultures of Cdc5-ProA (YCH199) and strain W303a expressing an untagged Cdc5p. Samples for FACS analysis and extract preparation were taken when >95% of the cells in the culture were appropriately arrested, as detected by light microscopy. Cdc5-ProA (a) and actin (b) in the crude extract were detected by immunoblotting with anti-IgG and antiactin antibodies, respectively. (c) Cdc5-ProA was routinely immunoprecipitated from 400 μg of extract with IgG-Sepharose beads and detected as above by immunoblotting. (d) Kinase activity in these immunocomplexes was measured as described in Materials and Methods with casein as the substrate, except in the case of the 4× HU lane, where 1.6 mg of extract was used. (e) A bar graph of the [32P]-casein levels is shown. Levels were quantitated with a Molecular Dynamics PhosphorImager. (f) Cdc5-ProA kinase activity was determined for cdc5-1-proA (YCH214) cultures grown either asynchronously (Async) (23°C), in the presence of nocodazole (NZ) (3 h, 23°C) or in the presence of nocodazole (3 h, 23°C) followed by a 1-h shift to 37°C (NZ→37). Cdc5-ProA kinase activity was also determined for a wild-type strain expressing Cdc5-ProA (YCH199) arrested in the presence of nocodazole and loaded on the same gel. (g) FACS analysis of DNA content.