Identification of three human SMC family proteins.
(A) Sequence comparison of the conserved C-terminal domains of the SMC family proteins. Three PCR fragments C1, C2, and E1 obtained from human cDNAs are translated and compared with other family members [either SMC1(XCAP-C) or SMC2(XCAP-E) subfamily] in different species. Human SMC protein genes, to which the PCR fragments correspond, are indicated in parentheses. C1 (hCAP-C) and C2 (SB1.8/hSMC1) were aligned with XCAP-C (
Xenopus) (3), cut3 (
S. pombe) (10), Smc4 (
S. cerevisiae data base), Smc1 (
S. cerevisiae) (1), and hSMC1 (human SB1.8) (14). E1 (hCAP-E) was compared with XCAP-E (
Xenopus) (3), scaffold protein II (chicken) (13), cut14 (
S. pombe) (10), Smc2 (
S. cerevisiae) (2), and Smc3 (
S. cerevisiae database). Amino acids identical to C1 or E1 are shown as “⋅,” and three amino acids that distinguish two subfamilies are shown in bold letters (EKT vs. QRS). The numbers represent the amino acid positions of each protein. The amino acid sequences used to design PCR primers are underlined.
(B) Sequence comparison of the N-terminal sequences of SMC proteins in vertebrates. The N-terminal sequence of BSMC1 (identical to the corresponding region of SB1.8) is compared with XCAP-C and hCAP-C (see amino acid numbers). The N-terminal sequence of hCAP-E is compared with those of XCAP-E, Scaffold protein II, and BSMC2 (15). Three amino acids exhibiting nonconserved changes in BSMC2 are indicated in boldfaced letters.
(C) A schematic diagram of three human SMC protein cDNA clones. hSMC1 and hCAP-E cDNA clones are full-length, whereas the hCAP-C cDNA clone lacks the region corresponding to the first 80 amino acids. The conserved NTP-binding motif and DA box in the N and C termini are shown by ■ and

, respectively. The diverged coiled-coil domain in the middle is indicated. The thick underlines represent the region of proteins against which antibodies used in this study were raised.