Northern blot analysis of nusA operon mRNA. (A) Genetic organization of the nusA operon. Abbreviations: B, C, and D, probes used in the experiments for which results are shown in panels B, C, and D, respectively; R III and R E, processing sites for RNase III (34, 35) and RNase E (25, 36), respectively; (B through D) P, promoter; T, terminator. Five micrograms of total RNA was subjected to electrophoresis in an agarose gel containing formaldehyde, transferred to a Hybond N filter, and probed with a radiolabeled PCR fragment (probe D). The probe was removed by washing, and the filter was reprobed twice (probes C and B). The exposure times in the experiments for which results are shown in panels B and C were shorter than those in the experiment for which results are shown in panel D in order to avoid overexposure of the bands in strains PW109 and GOB083. The sizes of the γ-32P-labeled ATP kinase-treated fragments of the 1-kb DNA ladder from GIBCO BRL Life Technologies Inc. (Gaithersburg, Md.) are indicated. The strains used (with the relevant genetic markers in parentheses) were MW38 (rimM+), MW37 (ΔrimM-2), PW109 (ΔrimM-2 sdr-43), PW100 (ΔrimM-2 sdr-34), GOB113 (rimM+ sdr+), and GOB083 (rimM+ sdr-43).