Diagram of the genome organization of HCV strain H77 and the genetic heterogeneity of individual full-length clones compared with the consensus sequence of H77. Solid lines represent amino acid changes. Dashed lines represent silent mutations. A ∗ in pH21 represents a point mutation at nucleotide 58 in the 5′ UTR. In the ORF, the consensus chimeric clone pCV-H77C had 11 nucleotide differences [at positions 1,625 (C → T), 2,709 (T → C), 3,380 (A → G), 3,710 (C → T), 3,914 (G → A), 4,463 (T → C), 5,058 (C → T), 5,834 (C → T), 6,734 (T → C), 7,154 (C → T), and 7,202 (T → C)] and one amino acid change (F → L at amino acid 790) compared with the consensus sequence of H77. This clone was infectious. Clone pH21 and pCV-H11 had 19 nucleotide (7 amino acid) and 64 nucleotide (21 amino acid) differences, respectively, compared with the consensus sequence of H77. These two clones were not infectious. A single point mutation in the 3′ UTR at nucleotide 9,406 (G → A) introduced to create an AflII cleavage site is not shown.