Comput Appl Biosci. 1997 Jun;13(3):303-6.

End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.

Source

Department of Zoology, University of Oxford, UK. andrew.rumbaut@zoo.ox.ac.uk

Abstract

MOTIVATION: Phylogenetic trees constructed from molecular sequences contain information about the evolutionary or population dynamical processes that created them. Here we describe a computer package (End-Epi) that uses graphical methods to allow researchers to make inferences about these processes from their data. Statistical analyses can be performed to test the consistency of the data with various competing hypotheses. AVAILABILITY: End-Epi can be obtained by WWW from http://evolve.zoo.ox.ac.uk/ and by anonymous FTP from ftp://evolve.zoo.ox.ac.uk/packages/End-Epi10.hqx. This file contains the compiled application, the manual and a test tree.

PMID:: 9183536; [PubMed - indexed for MEDLINE]

Publication Types, MeSH Terms

Publication Types

Research Support, Non-U.S. Gov't

MeSH Terms

Supplemental Content

Save items

Related citations in PubMed

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. [Comput Appl Biosci. 1997]
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
Rambaut A, Grassly NC. Comput Appl Biosci. 1997 Jun; 13(3):235-8.
GENIE: estimating demographic history from molecular phylogenies. [Bioinformatics. 2002]
GENIE: estimating demographic history from molecular phylogenies.
Pybus OG, Rambaut A. Bioinformatics. 2002 Oct; 18(10):1404-5.
GEOMETRY: a software package for nucleotide sequence analysis using statistical geometry in sequence space. [Comput Appl Biosci. 1996]
GEOMETRY: a software package for nucleotide sequence analysis using statistical geometry in sequence space.
Kuznetsov I, Morozov P. Comput Appl Biosci. 1996 Aug; 12(4):297-301.
Review Inferring trees. [Methods Mol Biol. 2008]
Review Inferring trees.
Whelan S. Methods Mol Biol. 2008; 452:287-309.
Review Networks in phylogenetic analysis: new tools for population biology. [Int J Parasitol. 2005]
Review Networks in phylogenetic analysis: new tools for population biology.
Morrison DA. Int J Parasitol. 2005 Apr 30; 35(5):567-82.

See reviews... See all...

Cited by 7 PubMed Central articles

The first molecular phylogeny of Strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism. [PLoS One. 2011]
The first molecular phylogeny of Strepsiptera (Insecta) reveals an early burst of molecular evolution correlated with the transition to endoparasitism.
McMahon DP, Hayward A, Kathirithamby J. PLoS One. 2011; 6(6):e21206. Epub 2011 Jun 28.
Diversification of myco-heterotrophic angiosperms: evidence from Burmanniaceae. [BMC Evol Biol. 2008]
Diversification of myco-heterotrophic angiosperms: evidence from Burmanniaceae.
Merckx V, Chatrou LW, Lemaire B, Sainge MN, Huysmans S, Smets EF. BMC Evol Biol. 2008 Jun 23; 8:178. Epub 2008 Jun 23.
Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders. [Proc Biol Sci. 2007]
Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders.
Wiens JJ, Parra-Olea G, García-París M, Wake DB. Proc Biol Sci. 2007 Apr 7; 274(1612):919-28.

See all...

Related information

Related Citations
Calculated set of PubMed citations closely related to the selected article(s) retrieved using a word weight algorithm. Related articles are displayed in ranked order from most to least relevant, with the “linked from” citation displayed first.
Cited in PMC
Full-text articles in the PubMed Central Database that cite the current articles.

Recent activity

Clear Turn Off Turn On

End-Epi: an application for inferring phylogenetic and population dynamical proc...
End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.
Comput Appl Biosci. 1997 Jun ;13(3):303-6.

PubMed
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution...
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
Comput Appl Biosci. 1997 Jun ;13(3):235-8.

PubMed
Epidemiology and costs of acute hospital care for cerebrovascular disease in dia...
Epidemiology and costs of acute hospital care for cerebrovascular disease in diabetic and nondiabetic populations.
Stroke. 1997 Jun ;28(6):1142-6.

PubMed
Essential nature of choline with implications for total parenteral nutrition.
Essential nature of choline with implications for total parenteral nutrition.
J Am Diet Assoc. 1997 Jun ;97(6):639-46, 649; quiz 647-8.

PubMed
Two discrete regions of interleukin-2 (IL2) receptor beta independently mediate ...
Two discrete regions of interleukin-2 (IL2) receptor beta independently mediate IL2 activation of a PD98059/rapamycin/wortmannin-insensitive Stat5a/b serine kinase.
J Biol Chem. 1997 Jun 13 ;272(24):15459-65.

PubMed

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

PubMed

Result Filters

Display Settings:

Send to:

End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences.

Source

Abstract

Publication Types, MeSH Terms

Publication Types

MeSH Terms

Supplemental Content

Save items

Related citations in PubMed

Cited by 7 PubMed Central articles

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information